Progenesis SameSpots software references

2012

Bedon F, Villar E, Vincent D, Dupuy JW, Lomenech AM, Mabialangoma A, Chaumeil P, Barré A, Plomion C, Gion JM. Proteomic plasticity of two Eucalyptus genotypes under contrasted water regimes in the field. Plant Cell Environ. Apr;35(4):790-805.

Bièche C, de Lamballerie M, Chevret D, Federighi M, Tresse O. Dynamic proteome changes in Campylobacter jejuni 81-176 after high pressure shock and subsequent recovery. J Proteomics. Feb 2;75(4):1144-56.

Brunelli L, Campagna R, Airoldi L, Cauli O, Llansola M, Boix J, Felipo V, Pastorelli R. Exploratory investigation on nitro- and phospho-proteome cerebellum changes in hyperammonemia and hepatic encephalopathy rat models. Metab Brain Dis. Mar;27(1):37-49.

Chan K, Casjens S, Parveen N. Detection of Established Virulence Genes and Plasmids To Differentiate Borrelia burgdorferi Strains. Infect Immun. Apr;80(4):1519-29.

Chen Z-Y, Brown RL, Menkir A, Cleveland TE. Identification of resistance-associated proteins in closely-related maize lines varying in aflatoxin accumulation. Molecular Breeding, published on-line.

D'Alessandro A, Rinalducci S, Marrocco C, Zolla V, Napolitano F, Zolla L. Love me tender: An Omics window on the bovine meat tenderness network. Journal of Proteomics, published on-line.

D'Alessandroa A, Marroccoa C, Rinalduccia S, Mirasolea C, Faillab S, Zolla L. Chianina beef tenderness investigated through integrated Omics. Journal of Proteomics, published on-line.

Dalmasso M, Aubert J, Briard-Bion V, Chuat V, Deutsch SM, Even S, Falentin H, Jan G, Jardin J, Maillard MB, Parayre S, Piot M, Tanskanen J, Thierry A. A Temporal -omic Study of Propionibacterium freudenreichii CIRM-BIA1T Adaptation Strategies in Conditions Mimicking Cheese Ripening in the Cold. PLoS one, January 2012, Volume 7, Issue 1.

Davis, CM, Wiktorowicz JE, Soman KV, Straub C, Nance C, D'Souza M, Lester M, Stafford S, Pazdrak K, Thakkar K, Olive AP, Kurosky A. A Distinct Proteome Expression Profile and Extensive Changes in Cysteinyl S-Nitrosylation (SNO) in Eosinophilic Esophagitis. ournal of Allergy and Clinical Immunology, 129, 2.

Desoubeaux G, Jourdan ML, Valera L, Jardin B, Dumont C, Bailly E, Diot P, Chandenier J. Analyse protéomique statistique de liquides de lavages broncho-alvéolaires de rats atteints d’aspergillose pulmonaire invasive Journal de Mycologie Medicale, 22, 1, 98-99.

Dhiman M, Zago MP, Nunez S, Amoroso A, Rementeria H, Dousset P, Burgos FN, Garg NJ. Cardiac-Oxidized Antigens Are Targets of Immune Recognition by Antibodies and Potential Molecular Determinants in Chagas Disease Pathogenesis. PLoS one, January 2012, Volume 7, Issue 1.

Dsamou M, Palicki O, Septier C, Chabanet C, Lucchi G, Ducoroy P, Chagnon MC, Morzel M. Salivary protein profiles and sensitivity to the bitter taste of caffeine. Chem Senses. Jan;37(1):87-95.

Duncan AB, Agnew P, Noel V, Demettre E, Seveno M, Brizard JP, Michalakis Y. Proteome of Aedes aegypti in response to infection and coinfection with microsporidian parasites. Ecology and Evolution, published on-line.

Dymeka K, Dejmeka P, Panareseb V, Vicentec AA, Wadsöd L, Finniee C, Galindo FG. Effect of pulse delectricfield on the germination of barley seeds. LWT - Food Science and Technology, Volume 47, Issue 1, Pages 161–166.

Frost MR, Norton TT. Alterations in protein expression in tree shrew sclera during development of lens-induced myopia and recovery. Invest Ophthalmol Vis Sci. Jan 25;53(1):322-36.

Galant A, Koester RP, Ainsworth EA, Hicks LM, Jez JM. From climate change to molecular response: redox proteomics of ozone-induced responses in soybean. New Phytol. Apr;194(1):220-9.

Grimme C, Gemoll T, Habermann J, Seide K, Gerlach UJ. Proteinanalyse zur Diagnostik einer Osteitis/Osteomyelitis Trauma und Berufskrankheit. (3 March 2012), pp. 1-3.

Hockin NL, Mock T, Mulholland F, Kopriva S, Malin G. The response of diatom central carbon metabolism to nitrogen starvation is different from that of green algae and higher plants. Plant Physiol. Jan;158(1):299-312.

Hosako M, Muto T, Nakamura Y, Tsuta K, Tochigi N, Tsuda H, Asamura H, Tomonaga T, Kawai A, Kondo T. Proteomic study of malignant pleural mesothelioma by laser microdissection and two-dimensional difference gel electrophoresis identified cathepsin D as a novel candidate for a differential diagnosis biomarker. Journal of Proteomics, published on-line.

Kirschstein T, Mikkat S, Mikkat U, Bender R, Kreutzer M, Schulz R, Köhling R, Glocker MO. The 27-kDa heat shock protein (HSP27) is a reliable hippocampal marker of full development of pilocarpine-induced status epilepticus. Epilepsy Res. Jan;98(1):35-43.

Lesage VS, Merlino M, Chambon C, Bouchet B, Marion D, Branlard G. Proteomes of hard and soft near-isogenic wheat lines reveal that kernel hardness is related to the amplification of a stress response during endosperm development. J Exp Bot. Jan;63(2):1001-11.

Maaty WS, Selvig K, Ryder S, Tarlykov P, Hilmer JK, Heinemann J, Steffens J, Snyder JC, Ortmann AC, Movahed N, Spicka K, Chetia L, Grieco PA, Dratz EA, Douglas T, Young MJ, Bothner B. Proteomic analysis of Sulfolobus solfataricus during Sulfolobus Turreted Icosahedral Virus infection. J Proteome Res. Feb 3;11(2):1420-32.

Magagnotti C, Bachi A, Zerbini G, Fattore E, Fermo I, Riba M, Previtali SC, Ferrari M, Andolfo A, Benedetti S. Protein profiling reveals energy metabolism and cytoskeletal protein alterations in LMNA mutation carriers. Biochim Biophys Acta. Feb 3;1822(6):970-979.

Mairesse J, Vercoutter-Edouart AS, Marrocco J, Zuena AR, Giovine A, Nicoletti F, Michalski JC, Maccari S, Morley-Fletcher S. Proteomic characterization in the hippocampus of prenatally stressed rats. J Proteomics. Mar 16;75(6):1764-70.

Malaud E, Piquer D, Merle D, Molina L, Guerrier L, Boschetti E, Saussine M, Marty-Ané C, Albat B, Fareh J. Carotid atherosclerotic plaques: proteomics study after a low-abundance protein enrichment step. Electrophoresis. Feb;33(3):470-82.

Malý M, Májek P, Reicheltová Z, Suttnar J, Kotlín R, Hájek P, Oravec M, Dyr JE, Veselka J. Proteomic analysis of the plasma samples of patients with stable angina pectoris. Cor et Vasa, Volume 54, Issue 1, Pages e22-e26.

Mantha AK, Dhiman M, Taglialatela G, Perez-Polo RJ, Mitra S. Proteomic study of amyloid beta (25–35) peptide exposure to neuronal cells: Impact on APE1/Ref-1's protein–protein interaction. Journal of Neuroscience Research, Volume 90, Issue 6, pages 1230–1239. 

Mairesse J, Vercoutter-Edouart AS, Marrocco J, Zuena AR, Giovine A, Nicoletti F, Michalski JC, Maccari S, Morley-Fletcher S. Proteomic characterization in the hippocampus of prenatally stressed rats. J Proteomics. Mar 16;75(6):1764-70.

Martin P, Noonan S, Nolan B, Scaife C, Elia G, O'Donoghue D, Fennelly DW, O'Sullivan J. Characterization of serum proteome in patients with metastatic colorectal cancer responsive and nonresponsive to bevacizumab using 2D-DIGE. Journal of Clinical Oncology, Gastrointestinal Cancers Symposium. Vol 30, No 4_suppl (February 1 Supplement), 2012: 484.

Merzendorfer H, Kim HS, Chaudhari SS, Kumari M, Specht CA, Butcher S, Brown SJ, Manak JR, Beeman RW, Kramer KJ, Muthukrishnan S. Genomic and proteomic studies on the effects of the insect growth regulator diflubenzuron in the model beetle species Tribolium castaneum. Insect Biochem Mol Biol. Apr;42(4):264-76.

Meziania S, Nadauda I, Gaillard-Martinieb B, Chambonc C, Benalid M, Branlard G. Proteomic analysis of the mature kernel aleurone layer in common and durum wheat. Journal of Cereal Science, published online.

Miura N, Takemori N, Kikugawa T, Tanji N, Higashiyama S, Yokoyama M. Adseverin: A novel cisplatin-resistant marker in the human bladder cancer cell line HT1376 identified by quantitative proteomic analysis. Mol Oncol. Published online.

Molinari CE, Casadio YS, Hartmann BT, Livk A, Bringans S, Arthur PG, Hartmann PE. Proteome mapping of human skim milk proteins in term and preterm milk. J Proteome Res. Mar 2;11(3):1696-714.

Morofuji N, Ojima H, Onaya H, Okusaka T, Shimada K, Sakamoto Y, Esaki M, Nara S, Kosuge T, Asahina D, Ushigome M, Hiraoka N, Nagino M, Kondo T. Macrophage-capping protein as a tissue biomarker for prediction of response to gemcitabine treatment and prognosis in cholangiocarcinoma. J Proteomics. Feb 16;75(5):1577-89.

Murakami M, Imabayashi K, Watanabe A, Takeuchi N, Ishizaka R, Iohara K, Yamamoto T, Nakamura H, Nakashima M. Identification of Novel Function of Vimentin for Quality Standard for Regenerated Pulp Tissue. Journal of Endodontics, published online.

Neavea MJ, Streten-Joyceb C, Nouwens AS, Glasbyd CJ, McGuinness KA, Parry DL, Gibba KS. The transcriptome and proteome are altered in marine polychaetes (Annelida) exposed to elevated metal levels. Journal of Proteomics, published online.

Nøstbakken OJ, Goksøyr A, Martin SA, Cash P, Torstensen BE. Marine n-3 fatty acids alter the proteomic response to methylmercury in Atlantic salmon kidney (ASK) cells. Aquat Toxicol. Jan 15;106-107:65-75.

Nøstbakken OJ, Martin SA, Cash P, Torstensen BE, Amlund H, Olsvik PA. Dietary methylmercury alters the proteome in Atlantic salmon (Salmo salar) kidney. Aquat Toxicol. Feb;108:70-7.

Oliva K, Barker G, Riley C, Bailey MJ, Permezel M, Rice GE, Lappas M. The effect of pre-existing maternal obesity on the placental proteome: two-dimensional difference gel electrophoresis coupled with mass spectrometry. J Mol Endocrinol. Feb 22;48(2):139-49.

Pan TL, Wang PW, Chen CC, Fang JY, Sintupisut N. Functional proteomics reveals hepatotoxicity and the molecular mechanisms of different forms of chromium delivered by skin administration. Proteomics. Feb;12(3):477-89.

Perobelli JE, Alves TR, de Toledo FC, Fernandez CD, Anselmo-Franci JA, Klinefelter GR, Kempinas WD. Impairment on sperm quality and fertility of adult rats after antiandrogen exposure during prepuberty. Reprod Toxicol. Epub ahead of print.

Ramírez-Torres A, Barceló-Batllori S, Fernández-Vizarra E, Navarro MA, Arnal C, Guillén N, Acín S, Osada J. Proteomics and gene expression analyses of mitochondria from squalene-treated apoE-deficient mice identify short-chain specific acyl-CoA dehydrogenase changes associated with fatty liver amelioration. J Proteomics. Epub ahead of print.

Robb J, Shittu H, Soman KV, Kurosky A, Nazar RN. Arsenal of elevated defense proteins fails to protect tomato against Verticillium dahliae. Source Planta, published online.

Roche S, D'Ippolito G, Gomez LA, Bouckenooghe T, Lehmann S, Montero-Menei CN, Schiller PC. Comparative analysis of protein expression of three stem cell populations: Models of cytokine delivery system in vivo. Int J Pharm. Epub ahead of print.

Serpaggi V, Remize F, Recorbet G, Gaudot-Dumas E, Sequeira-Le Grand A, Alexandre H. Characterization of the "viable but nonculturable" (VBNC) state in the wine spoilage yeast Brettanomyces. Food Microbiol. Jun;30(2):438-47.

Snoussi S, May AE, Coquet L, Chan P, Jouenne T, Landoulsi A, Dé E. Adaptation of Salmonella enterica Hadar under static magnetic field: effects on outer membrane protein pattern. Proteome Sci. Feb 3;10(1):6.

Taga H, Chilliard Y, Meunier B, Chambon C, Picard B, Zingaretti MC, Cinti S, Bonnet M. Cellular and molecular large-scale features of fetal adipose tissue: is bovine perirenal adipose tissue brown? J Cell Physiol. Apr;227(4):1688-700.

Tait AS, Hogwood CEM, Smales CM, Bracewell DG. Host cell protein dynamics in the supernatant of a mAb producing CHO cell line. Biotechnology and Bioengineering, volume 109, Issue 4, pages 971–982.

Thompson EL, Taylor DA, Nair SV, Birch G, Haynes PA, Raftos DA. Proteomic discovery of biomarkers of metal contamination in Sydney Rock oysters (Saccostrea glomerata). Aquat Toxicol. Mar;109:202-12.

Umstead TM, Lu C-JK, Freeman WM, Myers JL, Clark JB, Thomas NJ, Icitovic N, Chinchilli VM, Ündar A, Phelps DS. The Kinetics of Cardiopulmonary Bypass: A Dual-Platform Proteomics Study of Plasma Biomarkers in Pediatric Patients Undergoing Cardiopulmonary Bypass. Artificial Organs, Volume 36, Issue 1, pages E1–E20.

Wallinder J, Bergström J, Henriksson AE. Discovery of a Novel Circulating Biomarker in Patients with Abdominal Aortic Aneurysm: A Pilot Study Using a Proteomic Approach. Clinical and Translational Science, Volume 5, Issue 1, pages 56–59.

Wen JJ, Garg NJ. Proteome Expression and Carbonylation Changes During Trypanosoma cruzi Infection and Chagas Disease in Rats. Mol Cell Proteomics. Apr;11(4).

Wulff T, Jokumsen A, Højrup P, Jessen F. Time-dependent changes in protein expression in rainbow trout muscle following hypoxia. J Proteomics. Apr 18;75(8):2342-51.

Xiao H, Zhang L, Zhou H, Lee JM, Garon EB, Wong DT. Proteomic analysis of human saliva from lung cancer patients using two-dimensional difference gel electrophoresis and mass spectrometry. Mol Cell Proteomics. Feb;11(2).

Xu C, Huang B. Proteins and Metabolites Regulated by Trinexapac-ethyl in Relation to Drought Tolerance in Kentucky Bluegrass. Journal of Plant Growth Regulation , Volume 31 (1).

Xue X, Li J, Wang W, Sztajer H, Wagner-Döbler I. The global impact of the delta subunit RpoE of the RNA polymerase on the proteome of Streptococcus mutans. Microbiology. Jan;158(Pt 1):191-206.

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2011

Aloui A, Recorbet G, Robert F, Schoefs B, Bertrand M, Henry C, Gianinazzi-Pearson V, Dumas-Gaudot E, Aschi-Smiti S.
Arbuscular mycorrhizal symbiosis elicits shoot proteome changes that are modified during cadmium stress alleviation in Medicago truncatula. BMC Plant Biol. May 5;11:75.

Alvarez S, Galant A, Jez JM, Hicks LM. Redox-regulatory mechanisms induced by oxidative stress in Brassica juncea roots monitored by 2-DE proteomics. Proteomics, Apr;11(7):1346-50.

Aranjuelo I, Cabrera-Bosquet L, Morcuende R, Avice JC, Nogués S, Araus JL, Martínez-Carrasco R, Pérez P. Does ear C sink strength contribute to overcoming photosynthetic acclimation of wheat plants exposed to elevated CO2? J Exp Bot.;62(11):3957-69.

Argüelles S, Cano M, Machado A, Ayala A. Effect of aging and oxidative stress on elongation factor-2 in hypothalamus and hypophysis. Mech Ageing Dev.Jan-Feb;132(1-2):55-64.

Arianmanesh M, McIntosh RH, Lea RG, Fowler PA, Al-Gubory KH. Ovine corpus luteum proteins, with functions including oxidative stress and lipid metabolism, show complex alterations during implantation. J Endocrinol.Jul;210(1):47-58.

Arvas M, Pakula T, Smit B, Rautio J, Koivistoinen H, Jouhten P, Lindfors E, Wiebe M, Penttilä M, Saloheimo M. Correlation of gene expression and protein production rate - a system wide study. BMC Genomics. Dec 20;12:616.

Beattie JH, Nicol F, Gordon MJ, Reid MD, Cantlay L, Horgan GW, Kwun IS, Ahn JY, Ha TY. Ginger phytochemicals mitigate the obesogenic effects of a high-fat diet in mice: a proteomic and biomarker network analysis. Mol Nutr Food Res. Sep;55 Suppl 2:S203-13.

Bedon F, Majada J, Feito I, Chaumeil P, Dupuy JW, Lomenech AM, Barre A, Gion JM, Plomion C,. Interaction between environmental factors affects the accumulation of root proteins in hydroponically grown Eucalyptus globulus (Labill.). Plant Physiol Biochem 49:69-76.

Bedon F, Villar E, Vincent D, Dupuy J-W, Lomenech A-M, Mabialangoma A, Chaumeil P, Barre A, Plomion C, Gion J-M. Proteomic plasticity of two Eucalyptus genotypes under contrasted water regimes in the field. Plant, Cell & Environment, Volume 35, Issue 4, pages 790–805.

Bièche C, de Lamballerie M, Chevret D, Federighi M, Tresse O. Dynamic proteome changes in Campylobacter jejuni 81-176 after high pressure shock and subsequent recovery. J Proteomics.Feb 2;75(4):1144-56.

Bienvenut WV, Espagne1 C, Martinez A, Majeran1 W, Valot B, Zivy M, Vallon O, Adam Z, Meinnel T, Giglione1 C. Dynamics of post-translational modifications and protein stability in the stroma of Chlamydomonas reinhardtii chloroplasts. Proteomics, Special Issue: Plant Proteomics, Volume 11, Issue 9, pages 1734–1750, No. 9.

Bjarnadóttir SG, Hollung K, Høy M, Veiseth-Kent E. Proteome changes in the insoluble protein fraction of bovine Longissimus dorsi muscle as a result of low-voltage electrical stimulation. Meat Sci. Oct;89(2):143-9.

Bona E, Marsano F, Massa N, Cattaneo C, Cesaro P, Argese E, di Toppi LS, Cavaletto M, Berta G. Proteomic analysis as a tool for investigating arsenic stress in Pteris vittata roots colonized or not by arbuscular mycorrhizal symbiosis. J Proteomics. Mar 30. Epub ahead of print.

Bortolato M, Devoto P, Roncada P, Frau R, Flore G, Saba P, Pistritto G, Soggiu A, Pisanu S, Zappala A, Ristaldi MS, Tattoli M, Cuomo V, Marrosu F, Barbaccia ML. Isolation rearing-induced reduction of brain 5α-reductase expression: relevance to dopaminergic impairments. Neuropharmacology.Jun;60(7-8):1301-8.    

Bourgeois M, Jacquin F, Cassecuelle F, Savois V, Belghazi M, Aubert G, Quillien L, Huart M, Marget P, Burstin J. A PQL (protein quantity loci) analysis of mature pea seed proteins identifies loci determining seed protein composition. Proteomics.May;11(9):1581-94.

Bouwman FG, de Roos B, Rubio-Aliaga I, Crosley LK, Duthie SJ, Mayer C, Horgan G, Polley AC, Heim C, Coort SLM, Evelo CT, Mulholland F,Johnson IT, Elliott RM, Daniel H, Mariman ECM. 2D-electrophoresis and multiplex immunoassay proteomic analysis of different body fluids and cellular components reveal known and novel markers for extended fasting. BMC Med Genomics. 2011; 4: 24.

Brunelli L, Campagna R, Airoldi L, Cauli O, Llansola M, Boix J, Felipo V, Pastorelli R. Exploratory investigation on nitro- and phospho-proteome cerebellum changes in hyperammonemia and hepatic encephalopathy rat models. Metab Brain Dis.Mar;27(1):37-49.

Burniston JG, Kenyani J, Wastling JM, Burant CF, Qi NR, Koch LG, Britton SL. Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity. Proteomics, Epub ahead of print.

Burté F, De Girolamo LA, Hargreaves AJ, Billett EE. Alterations in the mitochondrial proteome of neuroblastoma cells in response to complex 1 inhibition. J Proteome Res. 2011 Apr 1;10(4):1974-86.

Cabral MP, Soares NC, Aranda J, Parreira JR, Rumbo C, Poza M, Valle J, Calamia V, Lasa I, Bou G. Proteomic and Functional Analyses Reveal a Unique Lifestyle for Acinetobacter baumannii Biofilms and a Key Role for Histidine Metabolism. J Proteome Res. Jun 17. Epub ahead of print.

Cairns DA,. Statistical issues in quality control of proteomic analyses: good experimental design and planning. Proteomics. Mar;11(6):1037-48.

Cangahuala-Inocente GC, Da Silva MF, Johnson JM, Manga A, van Tuinen D, Henry C, Lovato PE, Dumas-Gaudot E,. Arbuscular mycorrhizal symbiosis elicits proteome responses opposite of P-starvation in SO4 grapevine rootstock upon root colonisation with two Glomus species. Mycorrhiza (in press).

Cardoen D, Ernst UR, Vaerenbergh MV, Boerjan B, de Graff DC, Wenseleers T, Schoofs L, Verleyen P. Differential Proteomics in Dequeened Honeybee Colonies Reveals Lower Viral Load in Hemolymph of Fertile Worker Bees. PLoS one, June 15 2011.

Charro N, Hood BL, Faria D, Pacheco P, Azevedo P, Lopes C, de Almeida AB, Couto FM, Conrads TP, Penque D. Serum proteomics signature of cystic fibrosis patients: a complementary 2-DE and LC-MS/MS approach. J Proteomics 74:110-126.

Chen Z-Y, Brown R, Menkir A, Cleveland T. Identification of resistance-associated proteins in closely-related maize lines varying in aflatoxin accumulation. Molecular Breeding, Epub ahead of print.

Chevalier F, Rossignol M. Proteomic analysis of Arabidopsis thaliana ecotypes with contrasted root architecture in response to phosphate deficiency. J Plant Physiol. Nov 1;168(16):1885-90.

Chung JH, Choi HJ, Kim SY, Hong KS, Min SK, Nam MH, Kim CW, Koh YH, Seo JB. Proteomic and biochemical analyses reveal the activation of unfolded protein response, ERK-1/2 and ribosomal protein S6 signaling in experimental autoimmune myocarditis rat model. BMC Genomics, 12:520.

Cilia M, Howe K, Fish T, Smith D, Mahoney J, Tamborindeguy C, Burd J, Thannhauser TW, Gray S. Biomarker discovery from the top down: Protein biomarkers for efficient virus transmission by insects (Homoptera: Aphididae) discovered by coupling genetics and 2-D DIGE. Proteomics. Jun;11(12):2440-58.

Cilia M, Tamborindeguy C, Fish T, Howe K, Thannhauser TW, Gray S,. Genetics coupled to quantitative intact proteomics links heritable aphid and endosymbiont protein expression to circulative polerovirus transmission. J Virol. 2011 Mar;85(5):2148-66.

Cilia M, Tamborindeguy C, Rolland M, Howe K, Thannhauser TW, Gray S,. Tangible benefits of the aphid Acyrthosiphon pisum genome sequencing for aphid proteomics: Enhancements in protein identification and data validation for homology-based proteomics. J Insect Physiol 57:179-190.

Conti A, Rodriguez GC, Chiechi A, Blazquez RM, Barbado V, Krènacs T, Novello C, Pazzaglia L, Quattrini I, Zanella L, Picci P, De Alava E, Benassi MS. Identification of potential biomarkers for giant cell tumor of bone using comparative proteomics analysis. Am J Pathol.Jan;178(1):88-97.

Cristobo I, Larriba MJ, de los Ríos V, García F, Muñoz A, Casal JI. Proteomic analysis of 1α,25-dihydroxyvitamin D3 action on human colon cancer cells reveals a link to splicing regulation. J Proteomics. Dec 21;75(2):384-97.

D'Alessandro A, D'Amici GM, Timperio AM, Merendino N, Zolla L. Docosohaexanoic acid-supplemented PACA44 cell lines and over-activation of Krebs cycle: An integrated proteomic, metabolomic and interactomic overview. J Proteomics. Jun 23, Epub ahead of print.

D'Alessandro A, Marrocco C, Zolla V, D'Andrea M, Zolla L. Meat quality of the longissimus lumborum muscle of Casertana and Large White pigs: metabolomics and proteomics intertwined. J Proteomics. Dec 21;75(2):610-27.

Darby IA, Vuillier-Devillers K, Pinault E, Sarrazy V, Lepreux S, Balabaud C, Bioulac-Sage P, Desmoulière A. Proteomic analysis of differentially expressed proteins in peripheral cholangiocarcinoma. Cancer Microenviron. Jun 26;4(1):73-91.

De Roos B, Wanders AJ, Wood S, Horgan G, Rucklige G, Reid M, Siebelink E, Brouwer IA. A high intake of industrial or ruminant trans fatty acids does not affect the plasma proteome in healthy men. Proteomics. 2011 Oct;11(19):3928-34.

Di Girolamo F, Righetti PG, D'Amato A, Chung MC. Cibacron Blue and proteomics: The mystery of the platoon missing in action. J Proteomics. 2011 Jul 20. Epub ahead of print.

Diz AP, Carvajal-Rodríguez A, Skibinski DO. Multiple hypothesis testing in proteomics: a strategy for experimental work. Mol Cell Proteomics.Mar;10(3).

Djegbe I, Corelie S, Rossigno M, Demettre E, Seveno M, Remoue F, Cordel V. Differential Expression of Salivary Proteins between Susceptible and Insecticide-Resistant Mosquitoes of Culex quinquefasciatus. PLoS one, published March 2011.

Dorrian JM, Briggs DA, Ridley ML, Layfield R, Kerr ID. Induction of a stress response in Lactococcus lactis is associated with a resistance to ribosomally active antibiotics. FEBS J. Nov;278(21):4015-24.

Dowsey, A. W., English, J. A., Lisacek, F., Morris, J. S., Yang, G.-Z. and Dunn, M. J. 2011. Image Analysis Tools in Proteomics. eLS, published online 17 Jan 2011.

Dsamou M, Palicki O, Septier C, Chabanet C, Lucchi G, Ducoroy P, Chagnon MC, Morzel M. Salivary Protein Profiles and Sensitivity to the Bitter Taste of Caffeine. Chem Senses. 2011 Aug 25, epub ahead of print.

Fan X, Wang J, Soman KV, Ansari GA, Khan MF. Aniline-induced nitrosative stress in rat spleen: proteomic identification of nitrated proteins. Toxicol Appl Pharmacol. 2011 Aug 15;255(1):103-12.

Fan Y, Murphy TB, Byrne JC, Brennan L, Fitzpatrick JM, Watson RW,. Applying Random Forests to identify biomarker panels in serum 2D-DIGE data for the detection and staging of prostate cancer. J. Proteome Res., 2011, 10 (3), pp 1361–1373.

Faulkner S, Elia G, Hillard M, O'Boyle P, Dunn M, Morris D. Immunodepletion of albumin and immunoglobulin G from bovine plasma. Proteomics, Jun;11(11):2329-35.

Fernandez-Garcia N, Hernandez M, Casado-Vela J, Bru R, Elortza F, P Hedden, Olmos E. Changes to the proteome and targeted metabolites of xylem sap in Brassica oleracea in response to salt stress. Plant, Cell & Environment Volume 34, Issue 5, pages 821–836, May 2011.

Ferry N, Stavroulakis S, Guan W, Davison GM, Bell HA, Weaver RJ, Down RE, Gatehouse JA, Angharad M. Gatehouse R. Molecular interactions between wheat and cereal aphid (Sitobion avenae): Analysis of changes to the wheat proteome. Proteomics, Volume 11, Issue 10, pages 1985–2002, May 2011.

Föcking M, Dicker P, English JA, Schubert KO, Dunn MJ, Cotter DR.  Common Proteomic Changes in the Hippocampus in Schizophrenia and Bipolar Disorder and Particular Evidence for Involvement of Cornu Ammonis Regions 2 and 3. Arch Gen Psychiatry. 68(5):477-488.

Földi I, Datki ZL, Szabó Z, Bozsó Z, Penke B, Janáky T. Proteomic study of the toxic effect of oligomeric Aβ1-42 in situ prepared from ‘iso-Aβ1-42’. Journal of Neurochemistry Volume 117, Issue 4, pages 691–702, May 2011.

De Franceschi L, Bertoldi M, De Falco L, Santos Franco S, Ronzoni L, Turrini F, Colancecco A, Camaschella C, Cappellini MD, Iolascon A. Oxidative stress modulates heme synthesis and induces peroxiredoxin-2 as a novel cytoprotective response in β-thalassemic erythropoiesis. Haematologica. Nov;96(11):1595-604.

De Franceschi L, Tomelleri C, Matte A, Brunati AM, Bovee-Geurts PH, Bertoldi M, Lasonder E, Tibaldi E, Danek A, Walker RH, Jung HH, Bader B, Siciliano A, Ferru E, Mohandas N, Bosman GJ. Erythrocyte membrane changes of chorea-acanthocytosis are the result of altered Lyn kinase activity. Blood. Nov 17;118(20):5652-63.

Franco CF, Santos R, Coelho AV. Proteome characterization of sea star coelomocytes – The innate immune effector cells of echinoderms. Proteomics, Volume 11, Issue 17, pages 3587–3592.

Gao L, Yan X, Li X, Guo G, Hu Y, Ma W, Yan Y. Proteome analysis of wheat leaf under salt stress by two-dimensional difference gel electrophoresis (2D-DIGE). Phytochemistry. 2011 Jul;72(10):1180-91.

Garcia MM, Gueant-Rodriguez RM, Pooya S, Brachet P, Alberto JM, Jeannesson E, Maskali F, Gueguen N, Marie PY, Lacolly P, Herrman M, Juilliere Y, Malthiery Y, Gueant JL. Methyl donor deficiency induces cardiomyopathy through altered methylation/acetylation of PGC-1α by PRMT1 and SIRT1. The Journal of Pathology, Volume 225, Issue 3, pages 324–335, November 2011

Goggin DE, Powles SB, Steadman KJ,. Selection for low or high primary dormancy in Lolium rigidum Gaud seeds results in constitutive differences in stress protein expression and peroxidase activity. Journal of Experimental Botany, J. Exp. Bot. (2011) 62 (3): 1037-1047.

Heng S, Cervero A, Simon C, Stephens AN, Li Y, Zhang J, Paule S, Rainczuk A, Singh H, Quinonero A, Tapia A, Velasquez L, Salamonsen L, Rombauts LJ, Nie G. Proprotein convertase 5/6 is critical for embryo implantation in women: regulating receptivity by cleaving EBP50, modulating ezrin binding, and membrane-cytoskeletal interactions. Endocrinology. Dec;152(12):5041-52.

Heywood WE, Madgett TE, Wang D, Wallington A, Hogg J, Mills K, Avent ND. 2D DIGE analysis of maternal plasma for potential biomarkers of Down Syndrome. Proteome Sci. Sep 19;9:56.

Hori C, Igarashi K, Katayama A, Samejima M. Effects of xylan and starch on secretome of the basidiomycete Phanerochaete chrysosporium grown on cellulose. FEMS Microbiology Letters, Volume 321, Issue 1, pages 14–23.

Hwang S, Kim M, Ryu S, Jeon B. Regulation of oxidative stress response by CosR, an essential response regulator in Campylobacter jejuni. PLoS One. 2011;6(7):e22300.

Ishizaka R, Iohara K, Murakami M, Fukuta O, Nakashima M. Regeneration of dental pulp following pulpectomy by fractionated stem/progenitor cells from bone marrow and adipose tissue. Biomaterials.Mar;33(7):2109-18.

Islam S, Ma W, Yan G, Gao L, Appels R. Differential recovery of lupin proteins from the gluten matrix in lupin-wheat bread as revealed by mass spectrometry and two-dimensional electrophoresis. J Agric Food Chem. Jun 22;59(12):6696-704.

Johansson E, Lange S, Jennische E,. Specially processed cereals diet increases plasma levels of active antisecretory factor and up-regulates rat hepatic glutathione S-transferase mu. Nutrition (in press).

Jung JH, Choi HJ, Kim SY, Hong KS, Min SK, Nam MH, Kim CW, Koh YH, Seo JB. Proteomic and biochemical analyses reveal the activation of unfolded protein response, ERK-1/2 and ribosomal protein S6 signaling in experimental autoimmune myocarditis rat model. BMC Genomics 2011, 12:520

Kawatani M, Takayama H, Muroi M, Kimura S, Maekawa T, Osada H. Identification of a Small-Molecule Inhibitor of DNA Topoisomerase II by Proteomic Profiling. Chemistry & Biology, Volume 18, Issue 6, 743-751,

Keidel EM, Dosch D, Brunner A, Kellermann J, Lottspeich F. Evaluation of protein loading techniques and improved separation in OFFGEL isoelectric focusing. Electrophoresis. Jun;32(13):1659-66.

Kelly J, Kavanagh K. Caspofungin primes the immune response of the larvae of Galleria mellonella and induces a non-specific antimicrobial response. J Med Microbiol. Feb;60(Pt 2):189-96.

Kim Y, Islam N, Moss BJ, Nandakumar MP, Marten MR. Autophagy induced by rapamycin and carbon-starvation have distinct proteome profiles in Aspergillus nidulans. Biotechnology and Bioengineering, Volume 108, Issue 11, pages 2705–2715.

King AG. Research Advances: Using Chemistry To Repel Pests, Improve Flavor, and Offer New Treatments. J. Chem. Educ., 88 (5), pp 532–535.

Knoll JE, Ramos ML, Zeng Y, Holbrook CC, Chow M, Chen S, Maleki S, Bhattacharya A, Ozias-Akins P. TILLING for allergen reduction and improvement of quality traits in peanut (Arachis hypogaea L.). BMC Plant Biol.May 12;11:81.

Kultima K, Sköld K, Borén M. Biomarkers of disease and post-mortem changes - Heat stabilization, a necessary tool for measurement of protein regulation. J Proteomics. Dec 10;75(1):145-59.

Kuramitsu Y, Hayashi E, Okada F, Zhang X, Ueyama Y, Nakamura K. Two-dimensional gel electrophoresis using immobilized pH gradient strips and FlamingoTM fluorescent gel stain identified non-nuclear proteins possibly related to malignant tumour progression. Anticancer Res. Apr;31(4):1259-63.

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Lu J, Arai C, Md AB, Ihara M. Plasmodium berghei proteome changes in response to SSJ-183 treatment. Bioorg Med Chem. Jul 1;19(13):4144-7.   

Madeira A, Mira NP, Santos PM, Coutinho CP, Pinto-de-Oliveira A, Moreira AS, Roma-Rodrigues C, Sa-Correia I. OMICS approaches to reveal Burkholderia cenocepacia adaptive strategies to long-term residence in the lungs of cystic fibrosis patients under antibiotic therapy. Bioengineering (ENBENG), 2011. ENBENG 2011.

Májek P, Reicheltová Z, Suttnar J, Malý M, Oravec M, Pečánková K, Dyr JE. Plasma proteome changes in cardiovascular disease patients: novel isoforms of apolipoprotein A1. J Transl Med. Jun 1;9:84.

Májek P, Reicheltová Z, Suttnar J, Cermák J, Dyr JE. Plasma proteome changes associated with refractory cytopenia with multilineage dysplasia. Proteome Sci. Oct 5;9:64.

Majumder A, Sultan A, Jersie-Christensen RR, Ejby M, Schmidt BG, Lahtinen SJ, Jacobsen S, Svensson B. Proteome reference map of Lactobacillus acidophilus NCFM and quantitative proteomics towards understanding the prebiotic action of lactitol. Proteomics. Sep;11(17):3470-81.

Manaa A, Ahmed HB, Valot B, Bouchet JP, Aschi-Smiti S, Causse , Faurobert M. Salt and genotype impact on plant physiology and root proteome variations in tomato. Journal of Experimental Botany, e-pub ahead of print.

Marco-Ramell A, Pato R, Peña R, Saco Y, Manteca X, Ruiz de la Torre JL, Bassols A. Identification of serum stress biomarkers in pigs housed at different stocking densities. Vet J. 2011 Nov;190(2):e66-71.

Marti S, Chabane YN, Alexandre S, Coquet L, Vila J, Jouenne T, Dé E. Growth of Acinetobacter baumannii in Pellicle Enhanced the Expression of Potential Virulence Factors. PLoS one, October 27, 2011.

Martinez-Esteso MJ, Selles-Marchart S, Lijavetzky D, Pedren0 MA, Bru-Martinez R. A DIGE-based quantitative proteomic analysis of grape berry flesh development and ripening reveals key events in sugar and organic acid metabolism. Journal of Experimental Botany, Vol. 62, No. 8, pp. 2521–2569.

Martinez-Esteso MJ, Sellés-Marchart S, Vera-Urbina JC, Pedreño MA, Bru-Martinez R. DIGE analysis of proteome changes accompanying large resveratrol production by grapevine (Vitis vinifera cv. Gamay) cell cultures in response to methyl-β-cyclodextrin and methyl jasmonate elicitors. J Proteomics. Aug 12;74(8):1421-36.

Mathieson W, Kirkland S, Leonard R, Thomas GA. Antimicrobials and in vitro systems: antibiotics and antimycotics alter the proteome of MCF-7 cells in culture. J Cell Biochem. Aug;112(8):2170-8.

Merewitz EB, Gianfagna T, Huang B. Protein accumulation in leaves and roots associated with improved drought tolerance in creeping bentgrass expressing an ipt gene for cytokinin synthesis. J. Exp. Bot. (2011) 62 (15): 5311-5333.

Mira NP, Santos PM, Coutinho CP, Pinto-de-Oliveira A, Moreira AS, Roma-Rodrigues C, Sa-Correia I. OMICS approaches to reveal Burkholderia cenocepacia adaptive strategies to long-term residence in the lungs of cystic fibrosis patients under antibiotic therapy. Meeting in Bioengineering (ENBENG), ENBENG 2011. 1st Portuguese Meeting.

Møller AL, Pedas P, Andersen B, Svensson B, Schjoerring JK, Finnie C. Responses of barley root and shoot proteomes to long-term nitrogen deficiency, short-term nitrogen starvation and ammonium. Plant Cell Environ. Dec; 34(12):2024-37.

Muto T, Taniguchi H, Kushima R, Tsuda H, Yonemori H, Chen C, Sugihara Y, Sakamoto K, Kobori Y, Palmer H, Nakamura Y, Tomonaga T, Tanaka H, Mizushima H, Fujita S, Kondo T. Global expression study in colorectal cancer on proteins with alkaline isoelectric point by two-dimensional difference gel electrophoresis. J Proteomics. 2011 May 16;74(6):858-73.

Nakanishi Y, Fukuda S, Chikayama E, Kimura Y, Ohno H, Kikuchi J,. A dynamic omics approach identifies nutrition-mediated microbial interactions. J Proteome Res. 2011 Feb 4;10(2):824-836.

Nordon IM, Hinchliffe RJ, Malkawi AH, Pirianov G, Torsney E, Loftus IM, Cockerill GW, Thompson MM. Comparative proteomics reveals a systemic vulnerability in the vasculature of patients with abdominal aortic aneurysms. J Vasc Surg. 2011 Oct;54(4):1100-1108.

O'Connell S, Slattery C, Ryan MP, McMorrow T. Identification of novel indicators of cyclosporine A nephrotoxicity in a CD-1 mouse model. Toxicol Appl Pharmacol. Apr 15;252(2):201-10.

O'Dwyer D, Ralton LD, O'Shea A, Murra GI. The Proteomics of Colorectal Cancer: Identification of a Protein Signature Associated with Prognosis. PLoS one, Nov 2011.

O'Hanlon KA, Cairns T, Stack D, Schrettl M, Bignell EM, Kavanagh K, Miggin SM, O'Keeffe G, Larsen TO, Doyle S. Targeted disruption of nonribosomal peptide synthetase pes3 augments the virulence of Aspergillus fumigatus. Infect Immun. Oct;79(10):3978-92.

Patramool S, Surasombatpattana P, Luplertlop N, Sévéno M, Choumet V, Thomas F, Missé D. Proteomic analysis of an Aedes albopictus cell line infected with Dengue serotypes 1 and 3 viruses. Parasit Vectors. Jul 18;4:138.

Pedersen ME, Takle H, Ytteborg E, Veiseth-Kent E, Enersen G, Færgestad E, Baeverfjord G, Hannesson KO. Matrilin-1 expression is increased in the vertebral column of Atlantic salmon (Salmo salar L.) individuals displaying spinal fusions. Fish Physiol Biochem. Dec;37(4):821-31.

Phelps DS, Umstead TM, Quintero OA, Yengo CM, Floros J. In vivo rescue of alveolar macrophages from SP-A knockout mice with exogenous SP-A nearly restores a wild type intracellular proteome; actin involvement. Proteome Sci. Oct 28;9:67.

Polden J, McManus CA, Dos Remedios C, Dunn MJ. A 2-D gel reference map of the basic human heart proteome. Proteomics. Sep;11(17):3582-6.

Prins A, Mukubi JM, Pellny TK, Verrier PJ, Beyene G, Lopes MS, Emami K, Treumann A, Lelarge-Trouverie C, Noctor G, Kunert KJ, Kerchev P, Foyer CH,. Acclimation to high CO(2) in maize is related to water status and dependent on leaf rank. Plant, Cell & Environment, Volume 34, Issue 2, pages 314–331.

Promeyrat A, Sayd T, Laville E, Chambon C, Lebret B, Gatellier Ph. Early post-mortem sarcoplasmic proteome of porcine muscle related to protein oxidation. Food Chemistry, 127, 1097–1104.

Radpour R, Barekati Z, Kohler C, Schumacher MM, Grussenmeyer T, Jenoe P, Hartmann N, Moe S, Letzkus M, Bitzer J, Lefkovit I, Staedtler F, Yan Zhong X. Integrated Epigenetics of Human Breast Cancer: Synoptic Investigation of Targeted Genes, MicroRNAs and Proteins upon Demethylation Treatment. PLoS one, November 4, 2011.

Rinalducci S, Egidi MG, Karimzadeh G, Jazii FR, Zolla L. Proteomic analysis of a spring wheat cultivar in response to prolonged cold stress. Electrophoresis. Jul;32(14):1807-18.

Rinalducci S, Egidi MG, Mahfoozi S, Godehkahriz SJ, Zolla L. The influence of temperature on plant development in a vernalization-requiring winter wheat: A 2-DE based proteomic investigation. J Proteomics. May 1;74(5):643-59.

Rowland JG, Simon WJ, Prakash JS, Slabas AR. Proteomics reveals a role for the RNA helicase crhR in the modulation of multiple metabolic pathways during cold acclimation of Synechocystis sp. PCC6803. J Proteome Res. Aug 5;10(8):3674-89.

Rul F, Ben-Yahia L, Chegdani F, Wrzosek L, Thomas S, Noordine ML, Gitton C, Cherbuy C, Langella P, Thomas M. Impact of the metabolic activity of Streptococcus thermophilus on the colon epithelium of gnotobiotic rats. J Biol Chem. 25;286(12):10288-96.

Ruvolo PP, Zhou L, Watt JC, Ruvolo VR, Burks JK, Jiffar T, Kornblau S, Konopleva M, Andreeff M. Targeting PKC-mediated signal transduction pathways using enzastaurin to promote apoptosis in acute myeloid leukemia-derived cell lines and blast cells. J Cell Biochem. Jun;112(6):1696-707.

Sadiq I, Fanucchi F, Paparelli E, Alpi E, Bachi A, Alpi A, Perata P. Proteomic identification of differentially expressed proteins in the anoxic rice coleoptile. J Plant Physiol. Dec 15;168(18):2234-43.

Sas KM, Janech MG, Favre E, Arthur JM, Bell PD. Cilia movement regulates expression of the Raf-1 kinase inhibitor protein. Am J Physiol Renal Physiol. May;300(5):F1163-70.

Seferovic MD, Chen S, Pinto DM, Gupta MB. Altered liver secretion of vascular regulatory proteins in hypoxic pregnancies stimulate angiogenesis in vitro. J Proteome Res. Apr 1;10(4):1495-504.

Shah S, Lee YJ, Hannapel DJ, Rao AG,. Protein profiling of the potato petiole under short day and long day photoperiods. J Proteomics 74:212-230.

Shippy DC, Eakley NM, Bochsler PN, Fadl AA. Biological and virulence characteristics of Salmonella enterica serovar Typhimurium following deletion of glucose-inhibited division (gidA) gene. Microb Pathog. Jun;50(6):303-13.

Smith A, van Rooyen JP, Argo E, Cash P. Proteomic analysis of Escherichia coli associated with urinary tract infections. Proteomics, Volume 11, Issue 11, pages 2283–2293.

Sonderegger S, Yap J, Menkhorst E, Weston G, Stanton PG, Dimitriadis E. Interleukin (IL)11 mediates protein secretion and modification in human extravillous trophoblasts. Hum. Reprod. 26 (10): 2841-2849.

Staunton L, Jockusch H, Wiegand C, Albrecht T, Ohlendieck K. Identification of secondary effects of hyperexcitability by proteomic profiling of myotonic mouse muscle. Mol Biosyst. Aug;7(8):2480-9.

Stauntona L, Jockuschb H, Ohlendiecka K. Proteomicanalysis of muscleaffected by motorneuron degeneration: The wobbler mouse model of amyotrophic lateral sclerosis. Biochemical and Biophysical Research Communications, Volume 406, Issue 4, Pages 595–600.

Straub C, Burnham JP, White AC Jr, Pazdrak K, Sanchez C, Watanabe LC, Kurosky A, Montes M. Altered eosinophil proteome in a patient with hypereosinophilia from acute fascioliasis. Clin Vaccine Immunol. Nov;18(11):1999-2002.

Sucic S, El-Kasaby A, Kudlacek O, Sarker S, Sitte HH, Marin P, Freissmuth M. The serotonin transporter is an exclusive client of the coat protein complex II (COPII) component SEC24C. J Biol Chem. 6;286(18):16482-90.

Swali A, McMullen S, Hayes H, Gambling L, McArdle HJ, Langley-Evans SC. Cell Cycle Regulation and Cytoskeletal Remodelling Are Critical Processes in the Nutritional Programming of Embryonic Development. PLoS one, Aug 2011.

Tasleem-Tahir A, Nadaud I, Girousse C, Martre P, Marion D, Branlard G. Proteomic analysis of peripheral layers during wheat (Triticum aestivum L.) grain development. Proteomics. Feb;11(3):371-9.

Taylor NL, Heazlewood JL, Millar AH. The Arabidopsis thaliana 2-D gel mitochondrial proteome: Refining the value of reference maps for assessing protein abundance, contaminants and post-translational modifications. Proteomics. May;11(9):1720-33.

Teyssier C, Grondin C, Bonhomme L, Lomenech AM, Vallance M, Morabito D, Label P, Lelu-Walter MA. Increased gelling agent concentration promotes somatic embryo maturation in hybrid larch (Larix × eurolepsis): a 2-DE proteomic analysis. Physiol Plant. Feb;141(2):152-65.

Theron L, Sayd T, Pinguet J, Chambon C, Robert N, Sainte-Lhoutellier V. Proteomic analysis of semimembranosus and biceps femoris muscles from Bayonne dry-cured ham. Meat Sci. 2011 May;88(1):82-90.

Thompson EL, Taylor DA, Nair SV, Birch G, Haynes PA, Raftos DA. A proteomic analysis of the effects of metal contamination on Sydney Rock Oyster (Saccostrea glomerata) haemolymph. Aquat Toxicol. Jun;103(3-4):241-9.

Tsai I, Tomczyk N, Eckmann J, Composto R, Eckmann D,. Human plasma protein adsorption onto dextranized surfaces: a two-dimensional electrophoresis and mass spectrometry study. Colloids and Surfaces B, Colloids and Surfaces B: Biointerfaces Vol 84, Issue 1, May 2011, Pages 241-252.

Valledor L, Jorrin J,. Back to the basics: Maximizing the information obtained by quantitative two dimensional gel electrophoresis analyses by an appropriate experimental design and statistical analyses. J Proteomics 74:1-186.

Virlouvet L, Jacquemot MP, Gerentes D, Corti H, Bouton S, Gilard F, Valot B, Trouverie J, Tcherkez G, Falque M, Damerval C, Rogowsky P, Perez P, Noctor G, Zivy M, Coursol S. The ZmASR1 Protein Influences Branched-Chain Amino Acid Biosynthesis and Maintains Kernel Yield in Maize under Water-Limited Conditions. Plant Physiol. 2011 October; 157(2): 917–936.

Wang J, Betancourt AM, Mobley JA, Lamartiniere CA. Proteomic discovery of genistein action in the rat mammary gland. J Proteome Res. Apr 1;10(4):1621-31.

Wang J, Han X, Saha S, Xu T, Rai R, Zhang F, Wolf YI, Wolfson A, Yates JR 3rd, Kashina A. Arginyltransferase is an ATP-independent self-regulating enzyme that forms distinct functional complexes in vivo. Chem Biol. Jan 28;18(1):121-30.

Wang H, Wang S, Lu Y, Alvarez S, Hicks LM, Ge X, Xia Y. Proteomic Analysis of Early-Responsive Redox-Sensitive Proteins in Arabidopsis. J. Proteome Res., 11 (1), pp 412–424.

Wang H, Ye Y, Chu JH, Zhu G-Y, Fong WF, Yu ZL. Proteomic and Functional Analyses Reveal the Potential Involvement of Endoplasmic Reticulum Stress and a-CP1 in the Anticancer Activities of Oridonin in HepG2 Cells. Integrative Cancer Therapies 10(2) 160–167.

Wang H, Ye Y, Pan SY, Zhu GY, Li YW, Fong DW, Yu ZL,. Proteomic identification of proteins involved in the anticancer activities of oridonin in HepG2 cells. Phytomedicine, Jan 15;18(2-3):163-9.

Wang Y, Kuramitsu Y, Takashima M, Yokoyama Y, Iizuka N, Tamesa T, Sakaida I, Oka M, Nakamura K. Identification of four isoforms of aldolase B down-regulated in hepatocellular carcinoma tissues by means of two-dimensional Western blotting. In Vivo. Nov-Dec;25(6):881-6.

Welberry-Smith MP, Wood SL, Zougman A, Ho JTC, Peng J, Jackson D, Cairns DA, Lewington AJP, Selby PJ,Banks RE. A systematic analysis of the effects of increasing degrees of serum immunodepletion in terms of depth of coverage and other key aspects in top-down and bottom-up proteomic analyses. Proteomics. June; 11(11): 2222–2235.

Wiktorowicz JE, Stafford S, Rea H, Urvil P, Soman K, Kurosky A, Perez-Polo JR, Savidge TC. Quantification of Cysteinyl-S-Nitrosylation by Fluorescence in Unbiased Proteomic Studies. Biochemistry, 50 (25), pp 5601–5614.

Willing C, Peich M, Danescu A, Kehlen A, Fowler PA, Hombach-Klonisch S. Estrogen-independent actions of environmentally relevant AhR-agonists in human endometrial epithelial cells. Mol Hum Reprod. Feb;17(2):115-26.

Wulff T, Jokumsen A, Højrup P, Jessen F. Time-dependent changes in protein expression in rainbow trout muscle following hypoxia. J Proteomics. Apr 18;75(8):2342-51.

Yamamoto Y, Takase K, Kishino J, Fujita M, Okamura N, Sakaeda T, Fujimoto M, Yagami T. Proteomic Identification of Protein Targets for 15-Deoxy-D12,14-Prostaglandin J2 in Neuronal Plasma Membrane. PLoS one, Volume 6, Issue 3, e17552.

Yang F, Jensen JD, Svensson B, Jorgensen HJ, Collinge DB, Finnie C. Secretomics identifies Fusarium graminearum proteins involved in the interaction with barley and wheat. Mol Plant Pathol , published on-line.

Yang F, Jorgensen AD, Li H, Sondergaard I, Finnie C, Svensson B, Jiang D, Wollenweber B, Jacobsen S. Implications of high-temperature events and water deficits on protein profiles in wheat (Triticum aestivum L. cv. Vinjett) grain. Proteomics 11:1684-1695.

Yang F, Svensson B, Finnie C. Response of germinating barley seeds to Fusarium graminearum: The first molecular insight into Fusarium seedling blight. Plant Physiol Biochem 49:1362-1368.

Yap J, Foo CF, Lee MY, Stanton PG, Dimitriadis E. Proteomic analysis identifies interleukin 11 regulated plasma membrane proteins in human endometrial epithelial cells in vitro. Reprod Biol Endocrinol 9:73.

Yco L, Namavari A, Chaudhary SV, Sarkar J, Jain S. Proteomic Analysis Of Murine Corneas During Nerve Regeneration. Invest Ophthalmol Vis Sci 2011;52.

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Zambrano JL, Ettayebi K, Maaty WS, Faunce NR, Bothner B, Hardy ME. Rotavirus infection activates the UPR but modulates its activity. Virol J. 2011 Jul 20;8:359.

Zhang L, Pang E, Loo RR, Rao J, Go VL, Loo JA, Lu QY. Concomitant inhibition of HSP90, its mitochondrial localized homologue TRAP1 and HSP27 by green tea in pancreatic cancer HPAF-II cells. Proteomics. Dec;11(24):4638-47.

Zhou S, Sauvé RJ, Liu Z, Reddy S, Bhatti S. Heat-induced Proteome Changes in Tomato Leaves. J. Amer. Soc. Hort. Sci. 136: 219-226.

Zhou S, Sauvé RJ, Liu Z, Reddy S, Bhatti S. Identification of Salt-induced Changes in Leaf and Root Proteomes of the Wild Tomato, Solanum chilense. J. Amer. Soc. Hort. Sci. 136: 288-302.

Zurawel A, Moore EE, Peltz ED, Jordan JR, Damle S, Dzieciatkowska M, Banerjee A, Hansen KC. Proteomic profiling of the mesenteric lymph after hemorrhagic shock: Differential gel electrophoresis and mass spectrometry analysis. Clin Proteomics. Nov 10;8(1):1.

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2010

Albrecht D, Kniemeyer O, Brakhage AA, Guthke R,. Missing values in gel-based proteomics. Proteomics 2010, 10, 1202-1211

Aranjuelo I, Molero G, Erice G, Avice JC, Nogues S. Plant physiology and proteomics reveals the leaf response to drought in alfalfa (Medicago sativa L.). J Exp Bot (in press), published on-line 25 Aug.

Arguelles S, Cano M, Machado A, Ayala A,. Effect of aging and oxidative stress on elongation factor-2 in hypothalamus and hypophysis. Mech Ageing Dev. 2011 Jan-Feb;132(1-2):55-64.

Bancel E, Rogniaux H, Debiton C, Chambon C, Branlard G,. Extraction and Proteome Analysis of Starch Granule-Associated Proteins in Mature Wheat Kernel (Triticum aestivum L.). J. Proteome Res. 2010, 9 (6), pp 3299-3310.

Banfi C, Parolari A, Brioschi M, Barcella S, Loardi C, Centenaro C, Alamanni F, Mussoni F, Tremoli E,. Proteomic Analysis of Plasma from Patients Undergoing Coronary Artery Bypass Grafting Reveals a Protease/Antiprotease Imbalance in Favor of the Serpin r1-Antichymotrypsin. J. Proteome Res. 2010, 9 (5), pp 2347-2357.

Barba-Espin G, Diaz-Vivancos P, Clemente-Moreno MJ, Albacete A, Faize L, Faize M, Perez-Alfocea F, Hernandez JA,. Interaction between hydrogen peroxide and plant hormones during germination and the early growth of pea seedlings. Plant Cell Environ. 33:981-994.

Barkhudaryan N, Zakaryan H, Sarukhanyan F, Gabrielyan A, Dosch D, Kellermann J, Lottspeich F,. Hemorphins act as homeostatic agents in response to endotoxin-induced stress. Neurochem Res. 35:925-933.

Beganovic J, Guillot A, van de Guchte M, Jouan A, Gitton C, Loux V, Roy K, Huet S, Monod H, Monnet V,. Characterization of the insoluble proteome of Lactococcus lactis by SDS-PAGE LC-MS/MS leads to the identification of new markers of adaptation of the bacteria to the mouse digestive tract. J. Proteome Res. 2010, 9:677-688.

Bennion D, Charlson ES, Coon E, Misra R. Dissection of beta-barrel outer membrane protein assembly pathways through characterizing BamA POTRA 1 mutants of Escherichia coli. Mol Microbiol. (in press), published on-line 28 June.

Betancourt AM, Mobley JA, Russo J, Lamartiniere CA,. Proteomic Analysis in Mammary Glands of Rat Offspring Exposed In Utero to Bisphenol A. J Proteomics 2010, Apr 18;73(6):1241-53.

Bi `eche C, de Lamballerie M,2 Federighi M, Le Bail A, Tresse O. Proteins involved in Campylobacter jejuni 81-176 recovery after high-pressure treatment. Ann N Y Acad Sci. 2010 Feb;1189:133-8.

Bjarnadottir SG, Hollung K, Faergestad EM, Veiseth-Kent E. Proteome changes in bovine longissimus thoracis muscle during the first 48 h postmortem: shifts in energy status and myofibrillar stability. J Agric Food Chem 58:7408-7414.

Bones J, Byrne JC, O'Donoghue N, McManus C, Scaife C, Boissin H, Nastase A, Rudd PM,. Glycomic and Glycoproteomic Analysis of Serum from Patients with Stomach Cancer Reveals Potential Markers Arising from Host Defence Response Mechanisms. J Proteome Res (In press).

Byerley LO, Leamy L, Tam SW, Chou CW, Ravussin E,. Development of a serum profile for healthy aging. Age (Dordr) 32:497-507.

Bull VH, Fargestad EM, Strozynski M, Thiede B,. Temporal proteome profiling of taxol-induced mitotic arrest and apoptosis. Electrophoresis, 31:1873-1885.

Caperna TJ, Shannona AE, Blomberga LA, Garretta WM, Ramsaya TG,. Identification of protein carbonyls in serum of the fetal and neonatal pig. Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology (July 2010), Volume 156, Issue 3, Pages 189-196.

Chakravarti B, Mallik B, Chakravarti DN,. Proteomics and systems biology: application in drug discovery and development. Methods Mol Biol 662:3-28.

Chen ZY, Brown RL, Damann KE, Cleveland TE,. PR10 expression in maize and its effect on host resistance against Aspergillus flavus infection and aflatoxin production. Mol Plant Pathol 11:69-81.

Chevalier F, Kelly AL,. Proteomic Quantification of Disulfide-Linked Polymers in Raw and Heated Bovine Milk. J Agric Food Chem. 2010, Jun 23;58(12):7437-44.

Chiaramonte F, Anglade P, Baraige F, Gratadoux JJ, Langella P, Champomier-Verges MC, Zagorec M,. Analysis of Lactobacillus sakei mutants selected after adaptation to the gastrointestinal tract of axenic mice. Applied and Environmental Microbiology, May 2010, p. 2932-2939, Vol. 76, No. 9.

Darby IA, Vuillier-Devillers K, Pinault E, Sarrazy V, Lepreux S, Balabaud C, Bioulac-Sage P, Desmoulière A. Proteomic analysis of differentially expressed proteins in peripheral cholangiocarcinoma. Cancer Microenviron. Jun 26;4(1):73-91.

Daszykowski M, Bierczynska-Krzysik A, Silberring J, Walczak B. Chemometrics and Intelligent Laboratory Systems. Volume 104, Issue 1, 15 November 2010, Pages 2-7.

De Souza AI, Cardin S, Wait R, Chung YL, Vijayakumar M, Maguy A, Camm AJ, Nattel S. Proteomic and metabolomic analysis of atrial profibrillatory remodelling in congestive heart failure. J Mol Cell Cardiol. 2010 Nov;49(5):851-63. Epub 2010 Jul 23.

Diomede L, Cassata G, Fiordaliso F, Salio M, Ami D, Natalello A, Doglia SM, De Luigi A, Salmona M. Tetracycline and its analogues protect Caenorhabditis elegans from beta-amyloid-induced toxicity by targeting oligomers. Neurobiol Dis. 2010 Nov;40(2):424-31. Epub 2010 Jul 14.

Donoghue P, Staunton L, Mullen E, Manning G, Ohlendieck K,. DIGE analysis of rat skeletal muscle proteins using nonionic detergent phase extraction of young adult versus aged gastrocnemius tissue. Journal of Proteomics 2010, Jun 16;73(8):1441-53.

Emami K, Morris NJ, Cockell SJ, Golebiowska G, Shu QY, Gatehouse AM,. Changes in protein expression profiles between a low phytic acid rice ( Oryza sativa L. Ssp. japonica) line and its parental line: a proteomic and bioinformatic approach. J Agric Food Chem 58:6912-6922.

Facking M, Dicker P, Connolly N, Hudson L, English J, Dunn M, Cotter D,. Proteomic analysis of hippocampal sub-regions in schizophrenia and bipolar disorder reveals most prominent changes in ca2/3 and implicates abnormalities in clathrin mediated endocytosis. Proteomics, Volume 117, Issue 2, Page 255.

Fernandez-Garcia B, Casado P, Prado MA, Ugarte-Gil LJ, Artime N, Cabal-Hierro L, Calvo E, Lopez JA, Ramos S, Lazo PS,. Proteomic analysis of annexin A2 phosphorylation induced by microtubule interfering agents and kinesin spindle protein inhibitors. J Proteome Res 9:4649-4660.

Garcia MM, Guéant-Rodriguez RM, Pooya S, Brachet P, Alberto JM, Jeannesson E, Maskali F, Gueguen N, Marie PY, Lacolley P, Herrmann M, Juillière Y, Malthiery Y, Guéant JL. Methyl donor deficiency induces cardiomyopathy through altered methylation/acetylation of PGC-1α by PRMT1 and SIRT1. J Pathol. 2011 Nov;225(3):324-35.

Garnier M, Matamoros S, Chevret D, Pilet MF, Leroi F, Tresse O. Cold acclimation and cold shock proteomic responses of the psychrotrophic biopreservative Lactococcus piscium strain CNCM I-4031. Appl Environ Microbiol. 76:8011-8018.

Gaviraghi A, Deriu F, Soggiu A, Galli A, Bonacina C, Bonizzi L, Roncada P,. Proteomics to investigate fertility in bulls. Vet Res Commun 34 Suppl 1:S33-36.

Gelman BB, Nguyen TP,. Synaptic proteins linked to HIV-1 infection and immunoproteasome induction: proteomic analysis of human synaptosomes. J Neuroimmune Pharmacol 5:92-102.

Gerner C, Haudek V, Schandl U, Bayer E, Gundacker N, Hutter HP, Mosgoeller W,. Increased protein synthesis by cells exposed to a 1,800-MHz radio-frequency mobile phone electromagnetic field, detected by proteome profiling. Int Arch Occup Environ Health 83:691-702.

Gerner C, Haudek-Prinz VJ, Lackner A, Losert A, Peter-Vorosmarty B, Lorenz O, Grusch M,. Indications for cell stress in response to adenoviral and baculoviral gene transfer observed by proteome profiling of human cancer cells. Electrophoresis, 31:1822-1832.

Gilad O, Jacobsen S, Stuer-Lauridsen B, Pedersen MB, Garrigues C, Svensson B. Combined transcriptome and proteome analysis of Bifidobacterium animalis subsp. lactis BB-12 grown on xylo-oligosaccharides and a model of their utilisation. Appl Environ Microbiol. 76:7285-7291.

Gogel S, Lange S, Leung KY, Greene ND, Ferretti P (2010) Post-translational regulation of Crmp in developing and regenerating chick spinal cord. Dev Neurobiol 70:456-471.

Goggin DE, Powles SB, Steadman KJ. Selection for low or high primary dormancy in Lolium rigidum Gaud seeds results in constitutive differences in stress protein expression and peroxidase activity. J. Exp. Bot. (2011) 62 (3): 1037-1047.

Grassl J, Scaife C, Polden J, Daly CN, Iacovella MG, Dunn MJ, Clyne RK. Analysis of the budding yeast pH 4-7 proteome in meiosis. Proteomics 10:506-519.

Hannan NJ, Stephens AN, Rainczuk A, Hincks C, Rombauts LJ, Salamonsen LA,. 2D-DiGE analysis of the human endometrial secretome reveals differences between receptive and nonreceptive states in fertile and infertile women. J Proteome Res 9:6256-6264.

Hatsugai M, Kurokawa MS, Kouro T, Nagai K, Arito M, Masuko K, Suematsu N, Okamoto K, Itoh F, Kato T,. Protein profiles of peripheral blood mononuclear cells are useful for differential diagnosis of ulcerative colitis and Crohn's disease. J Gastroenterol 45:488-500.

Heywood WE, Madgett TE, Wang D, Wallington A, Hogg J, Mills K, Avent ND. 2D DIGE analysis of maternal plasma for potential biomarkers of Down Syndrome. Proteome Sci. 2011; 9: 56.

Hori C, Igarashi K, Katayama A, Samejima M. Effects of xylan and starch on secretome of the basidiomycete Phanerochaete chrysosporium grown on cellulose. FEMS Microbiol Lett. 2011 Aug;321(1):14-23.

Huang W, Bi T, Sun W. Comparative analysis of panicle proteomes of two upland rice varieties upon hyper-osmotic stress. Front. Biol. 2010, 5(6): 546–555.

Hosakoa M, Mutoa T, Nakamuraa Y, Tsutab K, Tochigic N, Tsudab H, Asamurad H, Tomonagae T, Kawaif A, Kondo T. Proteomic study of malignant pleural mesothelioma by laser microdissection and two-dimensional difference gel electrophoresis identified cathepsin D as a novel candidate for a differential diagnosis biomarker. epub ahead of print 5 Oct 2011.

Irigoyen C, Soria J, Acera A, Suarez-Cortes TM, Mendicute J,. Proteomic Analysis of Lens Soluble Fraction in Different Types of Cataracts. Association for Research in Vision and Ophthalmology 2010 meeting abstract and oral presentation, May 2010.

Kachman MT, Hurley MC, Thiele T, Srinivas G, Aronoff DM,. Comparative analysis of the extracellular proteomes of two Clostridium sordellii strains exhibiting contrasting virulence. Anaerobe, 2010 Aug;16(4):454-60.

Kandpal RP. Tyrosine Kinase-Deficient EphB6 Receptor-dependent Alterations in Proteomic Profiles of Invasive Breast Carcinoma Cells as Determined by Difference Gel Electrophoresis. Cancer Genomics and Proteomics September 1, 2010 vol. 7 no. 5 253-260.

Kilic NK, Stensballe A, Otzen DE, Donmez G,. Proteomic changes in response to chromium(VI) toxicity in Pseudomonas aeruginosa. Bioresour Technol, 101:2134-2140.

Kristiansen LC, Jacobsen S, Jessen F, Jorgensen BM,. Using a cross-model loadings plot to identify protein spots causing 2-DE gels to become outliers in PCA. Proteomics, Volume 10, Issue 8, pages 1721-1723.

Laino P, Shelton D, Finnie C, De Leonardis AM, Mastrangelo AM, Svensson B, Lafiandra D, Masci S,. Comparative proteome analysis of metabolic proteins from seeds of durum wheat (cv. Svevo) subjected to heat stress. Proteomics, 10:2359-2368.

Lamblin N, Ratajczak P, Hot D, Dubois E, Chwastyniak M, Beseme O, Drobecq H, Lemoine Y, Koussa M, Amouyel P, Pinet F,. Profile of macrophages in human abdominal aortic aneurysms: a transcriptomic, proteomic, and antibody protein array study. J. Proteome Res., 9:3720-3729.

Lau TY, Power KA, Dijon S, de Gardelle I, McDonnell S, Duffy MJ, Pennington SR, Gallagher WM,. Prioritization of candidate protein biomarkers from an in vitro model system of breast tumor progression toward clinical verification. J. Proteome Res., 9:1450-1459.

Lewis C, Ohlendieck K,. Proteomic profiling of naturally protected extraocular muscles from the 3 dystrophin-deficient mdx mouse. Biochem Biophys Res Commun 2010, Jun 11;396(4):1024-9.

Ling XB, Park JL, Carroll T, Nguyen KD, Lau K, Macaubas C, Chen E, Lee T, Sandborg C, Milojevic D, Kanegaye JT, Gao S, Burns J, Schilling J, Mellins ED. Plasma profiles in active systemic juvenile idiopathic arthritis: biomarkers and biological implications. Proteomics, 2010 Dec;10(24):4415-30.

Lorenz K, Bader M, Klaus A, Weiss W, Görg A, Hofmann T. Orosensory stimulation effects on human saliva proteome. J Agric Food Chem. 2011 Sep 28;59(18):10219-31.

Lu J, Arai C, Md AB, Ihara M. Plasmodium berghei proteome changes in response to SSJ-183 treatment. Bioorg Med Chem. 2011 Jul 1;19(13):4144-7. Epub 2011 May 11.

Lui JK, Lipscombe R, Arthur PG. Detecting changes in the thiol redox state of proteins following a decrease in oxygen concentration using a dual labeling technique. J. Proteome Res., 9:383-392.

Magdeldin S, Li H, Yoshida Y, Enany S, Zhang Y, Xu B, Fujinaka H, Yaoita E, Yamamoto T. Comparison of two dimensional electrophoresis mouse colon proteomes before and after knocking out Aquaporin 8. J Proteomics. 2010 Sep 10;73(10):2031-40.

Marco-Ramell A, Bassols A,. Enrichment of low-abundance proteins from bovine and porcine serum samples for proteomic studies. Res Vet Sci. Volume 89, Issue 3, Pages 340-343.

McManus CA, Polden J, Cotter DR, Dunn MJ,. Two-dimensional reference map for the basic proteome of the human dorsolateral prefrontal cortex (dlPFC) of the prefrontal lobe region of the brain. Proteomics, Volume 10, Issue 13, pages 2551-2555.

Morris JS, Clark BN, Wei W, Gutstein HB,. Evaluating the performance of new approaches to spot quantification and differential expression in 2-dimensional gel electrophoresis studies. J. Proteome Res., 9:595-604.

MottT, Soler M, Grigsby S, Medley R, Whitlock GC,. Identification of potential diagnostic markers among Burkholderia cenocepacia and B. multivorans supernatants. Journal of Clinical Microbiology, p. 4186-4192, Vol. 48, No. 11.

Murgiano L, D'Alessandro A, Egidi MG, Crisà A, Prosperini G, Timperio AM, Valentini A, Zolla L. A proteomics and transcriptomics investigation on longissimus muscles in Large White and Casertana pig breeds. J. Proteome Res., 2010, 9 (12), pp 6450–6466.

Nguyen VP, Hanna G, Rodrigues N, Pizzuto K, Yang E, Van Slyke P, Kim H, Chen SH, Dumont DJ,. Differential Proteomic Analysis of Lymphatic, Venous, and Arterial Endothelial Cells Extracted from Bovine Mesenteric Vessels. Proteomics 2010, Apr;10(8):1658-72.

Olson FJ, Sihlbom C, Davidsson P, Hulthe J, Fagerberg B, Bergstrom G. Consistent differences in protein distribution along the longitudinal axis in symptomatic carotid atherosclerotic plaques. Biochem Biophys Res Commun. 2010 Oct 29;401(4):574-80.

Page D, Gouble B, Valot B, Bouchet JP, Callot C, Kretzschmar A, Causse M, Renard CM, Faurobert M,. Protective proteins are differentially expressed in tomato genotypes differing for their tolerance to low-temperature storage. Planta 232:483-500.

Paradis F, Moore HS, Pasternak JA, Novak S, Dyck MK, Dixon WT, Foxcroft GR,. Pig preovulatory oocytes modulate cumulus cell protein and gene expression in vitro. Mol Cell Endocrinol. 2010, May 14;320(1-2):87-96.

Paule SG, Airey LM, Li Y, Stephens AN, Nie G. Proteomic Approach Identifies Alterations in Cytoskeletal Remodelling Proteins during Decidualization of Human Endometrial Stromal Cells. J Proteome Res, 2010 Nov 5;9(11):5739-47.

Pennington K, Peng J, Hung C-C, Banks RE, Robinson PA,. Differential Effects of Wild-Type and A53T Mutant Isoform of Alpha-Synuclein on the Mitochondrial Proteome of Differentiated SH-SY5Y Cells. J. Proteome Res., 2010, 9 (5), pp 2390-2401.

Polaskova V, Kapur A, Khan A, Molloy MP, Baker MS,. High-abundance protein depletion: comparison of methods for human plasma biomarker discovery. Electrophoresis, 31:471-482.

Ponce J, Brea D, Carrascal M, Guirao V, DeGregorio-Rocasolano N, Sobrino T, Castillo J, Dávalos A, Gasull T,. The effect of simvastatin on the proteome of detergent-resistant membrane domains: Decreases of specific proteins previously related to cytoskeleton regulation, calcium homeostasis and cell fate. Proteomics, Volume 10 Issue 10, Pages 1954-1965.

Portmann-Lanz CB, Schoeberlein A, Portmann R, Mohr S, Rollini P, Sager R, Surbek DV,. Turning placenta into brain: placental mesenchymal stem cells differentiate into neurons and oligodendrocytes. Am J Obstet Gynecol. 2010, Mar;202(3):294.e1-294.e11.

Qureshi MI, D'Amici GM, Fagioni M, Rinalducci S, Zolla L,. Iron stabilizes thylakoid protein-pigment complexes in Indian mustard during Cd-phytoremediation as revealed by BN-SDS-PAGE and ESI-MS/MS. J Plant Physiol. 2010 Jul 1;167(10):761-70.

Raghunathan VK, Grant MH, Ellis EM,. Changes in protein expression associated with chronic in vitro exposure of hexavalent chromium to osteoblasts and monocytes: a proteomic approach. J Biomed Mater Res A 92:615-625.

Recorbet G, Valot B, Robert F, Gianinazzi-Pearson V, Dumas-Gaudot E,. Identification of in planta-expressed arbuscular mycorrhizal fungal proteins upon comparison of the root proteomes of Medicago truncatula colonised with two Glomus species. Fungal Genet Biol. 2010, Jul;47(7):608-18.

Robinson AA, Dunn MJ, McCormack A, dos Remedios C, Rose ML,. Protective effect of phosphorylated Hsp27 in coronary arteries through actin stabilization. J. Mol. Cell Cardiol. 49:370-379.

Roma-Rodrigues C, Santos PM, Benndorf D, Rapp E, Sa-Correia I,. Response of Pseudomonas putida KT2440 to phenol at the level of membrane proteome. J Proteomics 2010, Jun 16;73(8):1461-78.

Siciliano A, Turrini F, Bertoldi M, Matte A, Pantaleo A, Olivieri O, De Franceschi L,. Deoxygenation affects tyrosine phosphoproteome of red cell membrane from patients with sickle cell disease. Blood Cells Mol Dis. 2010, Apr 15;44(4):233-42.

Silva E, O'Gorman M, Becker S, Auer G, Eklund A, Grunewald J, Wheelock AM,. In the eye of the beholder: does the master see the SameSpots as the novice? J. Proteome Res., 9:1522-1532.

Sissener NH, Martin SA, Cash P, Hevroy EM, Sanden M, Hemre GI,. Proteomic profiling of liver from Atlantic salmon (Salmo salar) fed genetically modified soy compared to the near-isogenic non-GM line. Mar Biotechnol (NY) 12:273-281.

Slany A, Haudek VJ, Zwickl H, Gundacker NC, Grusch M, Weiss TS, Seir K, Rodgarkia-Dara C, Hellerbrand C, Gerner C,. Cell characterization by proteome profiling applied to primary hepatocytes and hepatocyte cell lines Hep-G2 and Hep-3B. J. Proteome Res. 9:6-21.

Stephan C, Kohl M, Turewicz M, Podwojski K, Meyer HE, Eisenacher M,. Using Laboratory Information Management Systems as central part of a proteomics data workflow. Proteomics 2010, 10:1230-1249.

Stephens AN, Hannan NJ, Rainczuk A, Meehan KL, Chen J, Nicholls PK, Rombauts LJ, Stanton PG, Robertson DM, Salamonsen LA,. Post-translational modifications and protein-specific isoforms in endometriosis revealed by 2D DIGE. J Proteome Res 9:2438-2449.  

Stephens AN, Pereira-Fantini PM, Wilson G, Taylor RG, Rainczuk A, Meehan KL, Sourial M, Fuller PJ, Stanton PG, Robertson DM, Bines JE,.Proteomic analysis of the intestinal adaptation response reveals altered expression of fatty acid binding proteins following massive small bowel resection. J Proteome Res 9:1437-1449.

Suarez G, Sierra JC, Erova TE, Sha J, Horneman AJ, Chopra AK,. A type VI secretion system effector protein, VgrG1, from Aeromonas hydrophila that induces host cell toxicity by ADP ribosylation of actin. J. Bacteriol 192:155-168.

Telleria J, Biron DG, Brizard JP, Demettre E, Seveno M, Barnabe C, Ayala FJ, Tibayrenc M,. Phylogenetic character mapping of proteomic diversity shows high correlation with subspecific phylogenetic diversity in Trypanosoma cruzi. Proc Natl Acad Sci U S A 107:20411-20416.

Teyssier C, Grondin C, Bonhomme L, Lomenech AM, Vallance M, Morabito D, Label P, Lelu-Walter MA. Increased gelling agent concentration promotes somatic embryo maturation in hybrid larch (Larix x eurolepsis): a 2-DE proteomic analysis. Physiol Plant, (in press), published on-line 23 Oct.

Thambisetty M, Simmons A, Velayudhan L, Hye A, Campbell J, Zhang Y, Wahlund LO, et al,. Association of plasma clusterin concentration with severity, pathology, and progression in Alzheimer disease. Arch. Gen. Psychiatry, 67:739-748.

Tweedle EM,2, Khattak I, Ang CW, Nedjadi T, Jenkins R, Park BK, Kalirai H, Dodson A, Azadeh B, Terlizzo M, Grabsch H, Mueller W, Myint S, Clark P, Wong H, Greenhalf W, Neoptolemos JP, Rooney PS, Costello E,. Low molecular weight heat shock protein HSP27 is a prognostic indicator in rectal cancer but not colon cancer. Gut 2010;59:1501-1510

Wang Y, Carolan JC, Hao F, Nicholson JK, Wilkinson TL, Douglas AE,. Integrated metabonomic-proteomic analysis of an insect-bacterial symbiotic system. J. Proteome Res, 9:1257-1267.

Wasinpiyamongkol L, Patramool S, Luplertlop N, Surasombatpattana P, Doucoure S, Mouchet F, Séveno M, Remoue F, Demettre E, Brizard J-P, Jouin P, Biron DG, Thomas F, Misse D,. Blood-feeding and immunogenic Aedes aegypti saliva proteins. Proteomics, Volume 10, Issue 10, Pages 1906 - 1916.

Xu C, Huang B,. Differential proteomic response to heat stress in thermal Agrostis scabra and heat-sensitive Agrostis stolonifera. Physiol Plant 139:192-204.

Xu C, Huang B,. Differential proteomic responses to water stress induced by PEG in two creeping bentgrass cultivars differing in stress tolerance. J Plant Physiol 167:1477-1485.

Yang F, Jensen JD, Svensson B, JÃrgensen HJ, Collinge DB, Finnie C. Analysis of early events in the interaction between Fusarium graminearum and the susceptible barley (Hordeum vulgare) cultivar Scarlett. Proteomics. 2010 Nov;10(21):3748-55.

Yang F, Jensen JD, Spliid NH, Svensson B, Jacobsen S, Jorgensen LN, Jorgensen HJ, Collinge DB, Finnie C,. Investigation of the effect of nitrogen on severity of Fusarium head blight in barley. J Proteomics, 73:743-752.

You J, Fitzgerald A, Cozzi PJ, Zhao Z, Graham P, Russell PJ, Walsh BJ, Willcox M, Zhong L, Wasinger V, Li Y,. Post-translation modification of proteins in tears. Electrophoresis, Volume 31, Issue 11, pages 1853-1861.

Zuber H, Davidian JC, Aubert G, Aime D, Belghazi M, Lugan R, Heintz D, Wirtz M, Hell R, Thompson R, Gallardo K. The seed composition of Arabidopsis mutants for the group 3 sulfate transporters indicates a role in sulfate translocation within developing seeds. Plant Physiol 154:913-926.

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2009

Aloui A, Recorbet G, Gollotte A, Robert F, Valot B, Gianinazzi-Pearson V, Aschi-Smiti S, Dumas-Gaudot E (2009) On the mechanisms of cadmium stress alleviation in Medicago truncatula by arbuscular mycorrhizal symbiosis: a root proteomic study. Proteomics 9:420-433

Alvarez S, Berla BM, Sheffield J, Cahoon RE, Jez JM, Hicks LM (2009) Comprehensive analysis of the Brassica juncea root proteome in response to cadmium exposure by complementary proteomic approaches. Proteomics 9:2419-2431

Baudouin-Cornu P, Lagniel G, Chedin S, Labarre J (2009) Development of a new method for absolute protein quantification on 2-D gels. Proteomics 9:4606-4615

Bech-Serra JJ, Borthwick A, Colome N, Albar JP, Wells M, Sanchez del Pino M, Canals F (2009) A multi-laboratory study assessing reproducibility of a 2D-DIGE differential proteomic experiment. J Biomol Tech 20:293-296

Bonhomme L, Monclus R, Vincent D, Carpin S, Claverol S, Lomenech AM, Labas V, Plomion C, Brignolas F, Morabito D (2009) Genetic variation and drought response in two Populus x euramericana genotypes through 2-DE proteomic analysis of leaves from field and glasshouse cultivated plants. Phytochemistry 70:988-1002

Bonhomme L, Monclus R, Vincent D, Carpin S, Lomenech AM, Plomion C, Brignolas F, Morabito D (2009) Leaf proteome analysis of eight Populus xeuramericana genotypes: genetic variation in drought response and in water-use efficiency involves photosynthesis-related proteins. Proteomics 9:4121-4142

Bortner JD, Das A, Umstead TM, Freeman WM, Somiari R, Aliaga C, Phelps DS, El-Bayoumy K (2009) Down-Regulation of 14-3-3 Isoforms and Annexin A5 Proteins in Lung Adenocarcinoma - Induced by the Tobacco-Specific Nitrosamine NNK in the A/J Mouse Revealed by Proteomic Analysis. J Proteome Res 8:4050-4061

Bowick GC, Spratt HM, Hogg AE, Endsley JJ, Wiktorowicz JE, Kurosky A, Luxon BA, Gorenstein DG, Herzog NK (2009) Analysis of the differential host cell nuclear proteome induced by attenuated and virulent hemorrhagic arenavirus infection. J Virol 83:687-700

Burniston JG (2009) Adaptation of the rat cardiac proteome in response to intensity-controlled endurance exercise. Proteomics 9:106-115

Cash P, Argo E (2009) Analysis of bacterial proteins by 2DE. Methods Mol Biol 519:131-144

Chen J, Hannan N, Mak Y, Nicholls P, Zhang J, Rainczuk A, Stanton P, Robertson D, Salamonsen L, Stephens A (2009) Proteomic Characterization of Mid-Proliferative and Mid-Secretory Human Endometrium. J Proteome Res 8:2032-2044

Cilia M, Fish T, Yang X, McLaughlin M, Thannhauser TW, Gray S (2009) A comparison of protein extraction methods suitable for gel-based proteomic studies of aphid proteins. J Biomol Tech 20:201-215

Deighton RF, Short DM, McGregor RJ, Gow AJ, Whittle IR, McCulloch J (2009) The utility of functional interaction and cluster analysis in CNS proteomics. J Neurosci Methods 180:321-329

Desclos M, Etienne P, Coquet L, Jouenne T, Bonnefoy J, Segura R, Reze S, Ourry A, Avice JC (2009) A combined 15N tracing/proteomics study in Brassica napus reveals the chronology of proteomics events associated with N remobilisation during leaf senescence induced by nitrate limitation or starvation. Proteomics 9:3580-3608

Diz AP, Dudley E, MacDonald BW, Pina B, Kenchington EL, Zouros E, Skibinski DO (2009) Genetic variation underlying protein expression in eggs of the marine mussel Mytilus edulis. Mol Cell Proteomics 8:132-144

Endoh T, Engel JN (2009) CbpA: a polarly localized novel cAMP-binding protein in Pseudomonas aeruginosa. J Bacteriol 191:7193-7205

Fagioni M, D'Amici GM, Timperio AM, Zolla L (2009) Proteomic analysis of multiprotein complexes in the thylakoid membrane upon cadmium treatment. J Proteome Res 8:310-326

Fagioni M, Zolla L (2009) Does the different proteomic profile found in apical and basal leaves of spinach reveal a strategy of this plant toward cadmium pollution response? J Proteome Res 8:2519-2529

Fang Q, Strand A, Law W, Faca VM, Fitzgibbon MP, Hamel N, Houle B, Liu X, May DH, Poschmann G, Roy L, Stuhler K, Ying W, Zhang J, Zheng Z, Bergeron JJ, Hanash S, He F, Leavitt BR, Meyer HE, Qian X, McIntosh MW (2009) Brain-specific proteins decline in the cerebrospinal fluid of humans with Huntington disease. Mol Cell Proteomics 8:451-466

Gannon J, Doran P, Kirwan A, Ohlendieck K (2009) Drastic increase of myosin light chain MLC-2 in senescent skeletal muscle indicates fast-to-slow fibre transition in sarcopenia of old age. Eur J Cell Biol 88:685-700

Garcia V, Stevens R, Gil L, Gilbert L, Gest N, Petit J, Faurobert M, et al. (2009) An integrative genomics approach for deciphering the complex interactions between ascorbate metabolism and fruit growth and composition in tomato. C R Biol 332:1007-1021

Gibson DS, Blelock S, Curry J, Finnegan S, Healy A, Scaife C, McAllister C, Pennington S, Dunn M, Rooney M (2009) Comparative analysis of synovial fluid and plasma proteomes in juvenile arthritis--proteomic patterns of joint inflammation in early stage disease. J Proteomics 72:656-676

Gonzalez H, Ottervald J, Nilsson KC, Sjogren N, Miliotis T, Von Bahr H, Khademi M, Eriksson B, Kjellstrom S, Vegvari A, Harris R, Marko-Varga G, Borg K, Nilsson J, Laurell T, Olsson T, Franzen B (2009) Identification of novel candidate protein biomarkers for the post-polio syndrome - implications for diagnosis, neurodegeneration and neuroinflammation. J Proteomics 71:670-681

Grassl J, Westbrook JA, Robinson A, Boren M, Dunn MJ, Clyne RK (2009) Preserving the yeast proteome from sample degradation. Proteomics 9:4616-4626

Grebaut P, Chuchana P, Brizard JP, Demettre E, Seveno M, Bossard G, Jouin P, Vincendeau P, Bengaly Z, Boulange A, Cuny G, Holzmuller P (2009) Identification of total and differentially expressed excreted-secreted proteins from Trypanosoma congolense strains exhibiting different virulence and pathogenicity. Int J Parasitol 39:1137-1150

Grove H, Hollung K, Moldestad A, Faergestad EM, Uhlen AK (2009) Proteome Changes in Wheat Subjected to Different Nitrogen and Sulfur Fertilizations. J Agric Food Chem (In Press)

Hannan NJ, Stoikos CJ, Stephens AN, Salamonsen LA (2009) Depletion of high-abundance serum proteins from human uterine lavages enhances detection of lower-abundance proteins. J Proteome Res 8:1099-1103.

Haudek VJ, Slany A, Gundacker NC, Wimmer H, Drach J, Gerner C (2009) Proteome maps of the main human peripheral blood constituents. J Proteome Res 8:3834-3843.

Holloway KV, O'Gorman M, Woods P, Morton JP, Evans L, Cable NT, Goldspink DF, Burniston JG (2009) Proteomic investigation of changes in human vastus lateralis muscle in response to interval-exercise training. Proteomics 9:5155-5174.

Jia X, Veiseth-Kent E, Grove H, Kuziora P, Aass L, Hildrum KI, Hollung K (2009) Peroxiredoxin-6--a potential protein marker for meat tenderness in bovine longissimus thoracis muscle. J Anim Sci 87:2391-2399.

Joss JL, Molloy MP, Hinds L, Deane E (2009) A longitudinal study of the protein components of marsupial milk from birth to weaning in the tammar wallaby (Macropus eugenii). Dev Comp Immunol 33:152-161.

Kang Y, Techanukul T, Mantalaris A, Nagy JM (2009) Comparison of three commercially available DIGE analysis software packages: minimal user intervention in gel-based proteomics. J Proteome Res 8:1077-1084.

Karp NA, Lilley KS (2009) Investigating sample pooling strategies for DIGE experiments to address biological variability. Proteomics 9:388-397.

Kilpatrick LM, Stephens AN, Hardman BM, Salamonsen LA, Li Y, Stanton PG, Nie G (2009) Proteomic Identification of Caldesmon as a Physiological Substrate of Proprotein Convertase 6 in Human Uterine Decidual Cells Essential for Pregnancy Establishment. J Proteome Res 8:4983-4992.

Kim SM, Kumar V, Lin YQ, Karunanithi S, Ramaswami M (2009) Fos and Jun potentiate individual release sites and mobilize the reserve synaptic vesicle pool at the Drosophila larval motor synapse. Proc Natl Acad Sci U S A 106:4000-4005.

Lam L, Tsoutsman T, Arthur J, Semsarian C. Differential protein expression profiling of myocardial tissue in a mouse model of hypertrophic cardiomyopathy. J Mol Cell Cardiol (In Press).

Marcellin E, Chen WY, Nielsen LK (2009) Understanding plasmid effect on hyaluronic acid molecular weight produced by Streptococcus equi subsp. zooepidemicus. Metab Eng 12:62-69

Martinez-Esteso MJ, Selles-Marchart S, Vera-Urbina JC, Pedreno MA, Bru-Martinez R (2009) Changes of defense proteins in the extracellular proteome of grapevine (Vitis vinifera cv. Gamay) cell cultures in response to elicitors. J Proteomics 73:331-341

Monge M, Doll A, Colas E, Gil-Moreno A, Castellvi J, Garcia A, Colome N, Perez-Benavente A, Pedrola N, Lopez-Lopez R, Dolcet X, Ramon y Cajal S, Xercavins J, Matias-Guiu X, Canals F, Reventos J, Abal M (2009) Subtractive proteomic approach to the endometrial carcinoma invasion front. J Proteome Res 8:4676-4684

O'Connell K, Ohlendieck K (2009) Proteomic DIGE analysis of the mitochondria-enriched fraction from aged rat skeletal muscle. Proteomics 24:5509-5524

Pedreschi R, Hertog M, Robben J, Lilley KS, Karp NA, Baggerman G, Vanderleyden J, Nicolai B (2009) Gel-based proteomics approach to the study of metabolic changes in pear tissue during storage. J Agric Food Chem 57:6997-7004

Robinson AA, Westbrook JA, English JA, Boren M, Dunn MJ (2009) Assessing the use of thermal treatment to preserve the intact proteomes of post-mortem heart and brain tissue. Proteomics 9:4433-4444

Romesser PB, Perlman DH, Faller DV, Costello CE, McComb ME, Denis GV (2009) Development of a malignancy-associated proteomic signature for diffuse large B-cell lymphoma. Am J Pathol 175:25-35

Sheoran IS, Ross AR, Olson DJ, Sawhney VK (2009) Differential expression of proteins in the wild type and 7B-1 male-sterile mutant anthers of tomato (Solanum lycopersicum): a proteomic analysis. J Proteomics 71:624-636

Stella CL, Bennett MR, Devarajan P, Greis K, Wyder M, Macha S, Rao M, Jodicke C, Moussa H, How HY, Myatt L, Webster R, Sibai BM (2009) Preterm labor biomarker discovery in serum using 3 proteomic profiling methodologies. Am J Obstet Gynecol 201:387 e381-313

Takeshita M, Ishida Y, Akamatsu E, Ohmori Y, Sudoh M, Uto H, Tsubouchi H, Kataoka H (2009) Proanthocyanidin from blueberry leaves suppresses expression of subgenomic hepatitis C virus RNA. J Biol Chem 284:21165-21176

Timperio AM, D'Alessandro A, Pariset L, D'Amici GM, Valentini A, Zolla L (2009) Comparative proteomics and transcriptomics analyses of livers from two different Bos taurus breeds: "Chianina and Holstein Friesian". J Proteomics 73:309-322

Tsolakos N, Techanukul T, Wallington A, Zhao Y, Jones C, Nagy J, Wheeler JX (2009) Comparison of two combinations of cyanine dyes for prelabelling and gel electrophoresis. Proteomics 9:1727-1730

Umstead TM, Freeman WM, Chinchilli VM, Phelps DS (2009) Age-related changes in the expression and oxidation of bronchoalveolar lavage proteins in the rat. Am J Physiol Lung Cell Mol Physiol 296:L14-29

Valcu CM, Junqueira M, Shevchenko A, Schlink K (2009) Comparative proteomic analysis of responses to pathogen infection and wounding in Fagus sylvatica. J Proteome Res 8:4077-4091

Yang F, Jensen JD, Spliid NH, Svensson B, Jacobsen S, Jorgensen LN, Jorgensen HJ, Collinge DB, Finnie C (2009) Investigation of the effect of nitrogen on severity of Fusarium Head Blight in barley. J Proteomics 73:743-752

Zhou S, Sauve R, Thannhauser TW (2009) Proteome changes induced by aluminium stress in tomato roots. J Exp Bot 60:1849-1857

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2008

Burniston JG (2008) Changes in the rat skeletal muscle proteome induced by moderate-intensity endurance exercise. Biochim Biophys Acta 1784: 1077-1086.

Cieniewski-Bernard C, Acosta A, Dubois E, Lamblin N, Beseme O, Chwastyniak M, Amouyel P, Bauters C, Pinet F (2008) Proteomic analysis in cardiovascular diseases. Clin Exp Pharmacol Physiol 35: 362-366.

Desclos M, Dubousset L, Etienne P, Le Caherec F, Satoh H, Bonnefoy J, Ourry A, Avice JC (2008) A proteomic profiling approach to reveal a novel role of Brassica napus drought 22 kD/water-soluble chlorophyll-binding protein in young leaves during nitrogen remobilization induced by stressful conditions. Plant Physiol 147: 1830-1844.

Dhiman M, Nakayasu ES, Madaiah YH, Reynolds BK, Wen JJ, Almeida IC, Garg NJ (2008) Enhanced nitrosative stress during Trypanosoma cruzi infection causes nitrotyrosine modification of host proteins: implications in Chagas' disease. Am J Pathol 173: 728-740.

Fanous A, Weiss W, Gorg A, Jacob F, Parlar H (2008) A proteome analysis of the cadmium and mercury response in Corynebacterium glutamicum. Proteomics.

Gillet LC, Namoto K, Ruchti A, Hoving S, Boesch D, Inverardi B, Mueller D, Coulot M, Schindler P, Schweigler P, Bernardi A, Gil-Parrado S (2008) In-cell selectivity profiling of serine protease inhibitors by activity-based proteomics. Mol Cell Proteomics 7: 1241-1253.

Grove H, Jorgensen BM, Jessen F, Sondergaard I, Jacobsen S, Hollung K, Indahl U, Faergestad EM (2008) Combination of Statistical Approaches for Analysis of 2-DE Data Gives Complementary Results. J Proteome Res. (In Press)

Joss JL, Molloy MP, Hinds L, Deane E (2008) A longitudinal study of the protein components of marsupial milk from birth to weaning in the tammar wallaby (Macropus eugenii). Dev Comp Immunol 33: 152-161.

Karp NA, Feret R, Rubtsov DV, Lilley KS (2008) Comparison of DIGE and post-stained gel electrophoresis with both traditional and SameSpots analysis for quantitative proteomics. Proteomics 8: 948-960.

Meyer VS, Kastenmuller W, Gasteiger G, Franz-Wachtel M, Lamkemeyer T, Rammensee HG, Stevanovic S, Sigurdardottir D, Drexler I (2008) Long-term immunity against actual poxviral HLA ligands as identified by differential stable isotope labeling. J Immunol 181: 6371-6383.

Mikhaylova O, Ignacak ML, Barankiewicz TJ, Harbaugh SV, Yi Y, Maxwell PH, Schneider M, Van Geyte K, Carmeliet P, Revelo MP, Wyder M, Greis KD, Meller J, Czyzyk-Krzeska MF (2008) The von Hippel-Lindau tumor suppressor protein and Egl-9-Type proline hydroxylases regulate the large subunit of RNA polymerase II in response to oxidative stress. Mol Cell Biol 28: 2701-2717.

Morris JS, Clark BN, Gutstein HB (2008) Pinnacle: a fast, automatic and accurate method for detecting and quantifying protein spots in 2-dimensional gel electrophoresis data. Bioinformatics 24: 529-536.

Pandhal J, Wright PC, Biggs CA (2008) Proteomics with a pinch of salt: A cyanobacterial perspective. Saline Systems 4:1.

Panopoulos P, Mauro VP (2008) Antisense Masking Reveals Contributions of mRNA-rRNA Base Pairing to Translation of Gtx and FGF2 mRNAs. J Biol Chem 283: 33087-33093.

Rye MB, Faergestad EM, Martens H, Wold JP, Alsberg BK (2008) An improved pixel-based approach for analyzing images in two-dimensional gel electrophoresis. Electrophoresis 29: 1382-1393.

Seferovic MD, Krughkov V, Pinto D, Han VK, Gupta MB (2008) Quantitative 2-D gel electrophoresis-based expression proteomics of albumin and IgG immunodepleted plasma. J Chromatogr B Analyt Technol Biomed Life Sci 865: 147-152.

Sihlbom C, Kanmert I, Bahr H, Davidsson P (2008) Evaluation of the Combination of Bead Technology with SELDI-TOF-MS and 2-D DIGE for Detection of Plasma Proteins. J Proteome Res 7: 4191-4198.

Spiess PC, Morin D, Jewell WT, Buckpitt AR (2008) Measurement of protein sulfhydryls in response to cellular oxidative stress using gel electrophoresis and multiplexed fluorescent imaging analysis. Chem Res Toxicol 21: 1074-1085.

Starosta V, Pazdrak K, Boldogh I, Svider T, Kurosky A (2008) Lipoxin A4 counterregulates GM-CSF signaling in eosinophilic granulocytes. J Immunol 181: 8688-8699.

Stead DA, Paton NW, Missier P, Embury SM, Hedeler C, Jin B, Brown AJ, Preece A (2008) Information quality in proteomics. Brief Bioinform 9: 174-188.

Vasudev NS, Ferguson RE, Cairns DA, Stanley AJ, Selby PJ, Banks RE (2008) Serum biomarker discovery in renal cancer using 2-DE and prefractionation by immunodepletion and isoelectric focusing; increasing coverage or more of the same? Proteomics.

Yang X, Thannhauser TW, Burrows M, Cox-Foster D, Gildow FE, Gray SM (2008) Coupling genetics and proteomics to identify aphid proteins associated with vector-specific transmission of polerovirus (luteoviridae). J Virol 82: 291-299.

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2007

Berth M, Moser FM, Kolbe M, Bernhardt J (2007) The state of the art in the analysis of two-dimensional gel electrophoresis images. Appl Microbiol Biotechnol 76: 1223-1243.

Greene ND, Bamidele A, Choy M, de Castro SC, Wait R, Leung KY, Begum S, Gadian DG, Scott RC, Lythgoe MF (2007) Proteome changes associated with hippocampal MRI abnormalities in the lithium pilocarpine-induced model of convulsive status epilepticus. Proteomics 7: 1336-1344.

Khan A, Williams KL, Soon J, Nevalainen HK (2008) Proteomic analysis of the knob-producing nematode-trapping fungus Monacrosporium lysipagum. Mycol Res.
Lam L, Arthur J, Semsarian C (2007) Proteome map of the normal murine ventricular myocardium. Proteomics 7: 3629-3633.

Stockwin LH, Bumke MA, Yu SX, Webb SP, Collins JR, Hollingshead MG, Newton DL (2007) Proteomic Analysis Identifies Oxidative Stress Induction by Adaphostin. Clin Cancer Res 13: 3667-3681.

Witzel K, Surabhi GK, Jyothsnakumari G, Sudhakar C, Matros A, Mock HP (2007) Quantitative proteome analysis of barley seeds using ruthenium(II)-tris-(bathophenanthroline-disulphonate) staining. J Proteome Res 6: 1325-1333.

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2006

Miller I, Crawford J, Gianazza E (2006) Protein stains for proteomic applications: which, when, why? Proteomics 6: 5385-5408