Progenesis SameSpots and Progenesis Stats have simplified our proteomics research as the software is easy to use and the technical support from the Nonlinear Dynamics team is excellent.
Progenesis SameSpots software references
The rising rate of publications using Progenesis SameSpots (click to enlarge)
2011
Alvarez S, Galant A, Jez JM, Hicks LM. Redox-regulatory mechanisms induced by oxidative stress in Brassica juncea roots monitored by 2-DE proteomics. Proteomics, Apr;11(7):1346-50.
Aranjuelo I, Cabrera-Bosquet L, Morcuende R, Avice JC, Nogués S, Araus JL, Martínez-Carrasco R, Pérez P. Does ear C sink strength contribute to overcoming photosynthetic acclimation of wheat plants exposed to elevated CO2? J Exp Bot.;62(11):3957-69.
Argüelles S, Cano M, Machado A, Ayala A. Effect of aging and oxidative stress on elongation factor-2 in hypothalamus and hypophysis. Mech Ageing Dev.Jan-Feb;132(1-2):55-64.
Arianmanesh M, McIntosh RH, Lea RG, Fowler PA, Al-Gubory KH. Ovine corpus luteum proteins, with functions including oxidative stress and lipid metabolism, show complex alterations during implantation. J Endocrinol.Jul;210(1):47-58.
Bedon F, Majada J, Feito I, Chaumeil P, Dupuy JW, Lomenech AM, Barre A, Gion JM, Plomion C,. Interaction between environmental factors affects the accumulation of root proteins in hydroponically grown Eucalyptus globulus (Labill.). Plant Physiol Biochem 49:69-76.
Bienvenut WV, Espagne1 C, Martinez A, Majeran1 W, Valot B, Zivy M, Vallon O, Adam Z, Meinnel T, Giglione1 C. Dynamics of post-translational modifications and protein stability in the stroma of Chlamydomonas reinhardtii chloroplasts. Proteomics, Special Issue: Plant Proteomics, Volume 11, Issue 9, pages 1734–1750, No. 9.
Bjarnadóttir SG, Hollung K, Høy M, Veiseth-Kent E. Proteome changes in the insoluble protein fraction of bovine Longissimus dorsi muscle as a result of low-voltage electrical stimulation. Meat Sci. Oct;89(2):143-9.
Bona E, Marsano F, Massa N, Cattaneo C, Cesaro P, Argese E, di Toppi LS, Cavaletto M, Berta G. Proteomic analysis as a tool for investigating arsenic stress in Pteris vittata roots colonized or not by arbuscular mycorrhizal symbiosis. J Proteomics. Mar 30. Epub ahead of print.
Bortolato M, Devoto P, Roncada P, Frau R, Flore G, Saba P, Pistritto G, Soggiu A, Pisanu S, Zappala A, Ristaldi MS, Tattoli M, Cuomo V, Marrosu F, Barbaccia ML. Isolation rearing-induced reduction of brain 5α-reductase expression: relevance to dopaminergic impairments. Neuropharmacology.Jun;60(7-8):1301-8.
Bourgeois M, Jacquin F, Cassecuelle F, Savois V, Belghazi M, Aubert G, Quillien L, Huart M, Marget P, Burstin J. A PQL (protein quantity loci) analysis of mature pea seed proteins identifies loci determining seed protein composition. Proteomics.May;11(9):1581-94.
Bouwman FG, de Roos B, Rubio-Aliaga I, Crosley LK, Duthie SJ, Mayer C, Horgan G, Polley AC, Heim C, Coort SLM, Evelo CT, Mulholland F,Johnson IT, Elliott RM, Daniel H, Mariman ECM. 2D-electrophoresis and multiplex immunoassay proteomic analysis of different body fluids and cellular components reveal known and novel markers for extended fasting. BMC Med Genomics. 2011; 4: 24.
Burniston JG, Kenyani J, Wastling JM, Burant CF, Qi NR, Koch LG, Britton SL. Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity. Proteomics, Epub ahead of print.
Burté F, De Girolamo LA, Hargreaves AJ, Billett EE. Alterations in the mitochondrial proteome of neuroblastoma cells in response to complex 1 inhibition. J Proteome Res. 2011 Apr 1;10(4):1974-86.
Cabral MP, Soares NC, Aranda J, Parreira JR, Rumbo C, Poza M, Valle J, Calamia V, Lasa I, Bou G. Proteomic and Functional Analyses Reveal a Unique Lifestyle for Acinetobacter baumannii Biofilms and a Key Role for Histidine Metabolism. J Proteome Res. Jun 17. Epub ahead of print.
Cairns DA,. Statistical issues in quality control of proteomic analyses: good experimental design and planning. Proteomics (in press).
Cangahuala-Inocente GC, Da Silva MF, Johnson JM, Manga A, van Tuinen D, Henry C, Lovato PE, Dumas-Gaudot E,. Arbuscular mycorrhizal symbiosis elicits proteome responses opposite of P-starvation in SO4 grapevine rootstock upon root colonisation with two Glomus species. Mycorrhiza (in press).
Charro N, Hood BL, Faria D, Pacheco P, Azevedo P, Lopes C, de Almeida AB, Couto FM, Conrads TP, Penque D. Serum proteomics signature of cystic fibrosis patients: a complementary 2-DE and LC-MS/MS approach. J Proteomics 74:110-126.
Chen Z-Y, Brown R, Menkir A, Cleveland T. Identification of resistance-associated proteins in closely-related maize lines varying in aflatoxin accumulation. Molecular Breeding, Epub ahead of print.
Cilia M, Howe K, Fish T, Smith D, Mahoney J, Tamborindeguy C, Burd J, Thannhauser TW, Gray S. Biomarker discovery from the top down: Protein biomarkers for efficient virus transmission by insects (Homoptera: Aphididae) discovered by coupling genetics and 2-D DIGE. Proteomics. Jun;11(12):2440-58.
Cilia M, Tamborindeguy C, Fish T, Howe K, Thannhauser TW, Gray S,. Genetics coupled to quantitative intact proteomics links heritable aphid and endosymbiont protein expression to circulative polerovirus transmission. J Virol. 2011 Mar;85(5):2148-66.
Cilia M, Tamborindeguy C, Rolland M, Howe K, Thannhauser TW, Gray S,. Tangible benefits of the aphid Acyrthosiphon pisum genome sequencing for aphid proteomics: Enhancements in protein identification and data validation for homology-based proteomics. J Insect Physiol 57:179-190.
Conti A, Rodriguez GC, Chiechi A, Blazquez RM, Barbado V, Krènacs T, Novello C, Pazzaglia L, Quattrini I, Zanella L, Picci P, De Alava E, Benassi MS. Identification of potential biomarkers for giant cell tumor of bone using comparative proteomics analysis. Am J Pathol.Jan;178(1):88-97.
D'Alessandro A, D'Amici GM, Timperio AM, Merendino N, Zolla L. Docosohaexanoic acid-supplemented PACA44 cell lines and over-activation of Krebs cycle: An integrated proteomic, metabolomic and interactomic overview. J Proteomics. Jun 23, Epub ahead of print.
De Roos B, Wanders AJ, Wood S, Horgan G, Rucklige G, Reid M, Siebelink E, Brouwer IA. A high intake of industrial or ruminant trans fatty acids does not affect the plasma proteome in healthy men. Proteomics. 2011 Oct;11(19):3928-34.
Di Girolamo F, Righetti PG, D'Amato A, Chung MC. Cibacron Blue and proteomics: The mystery of the platoon missing in action. J Proteomics. 2011 Jul 20. Epub ahead of print.
Diz AP, Carvajal-Rodríguez A, Skibinski DO. Multiple hypothesis testing in proteomics: a strategy for experimental work. Mol Cell Proteomics.Mar;10(3).
Dowsey, A. W., English, J. A., Lisacek, F., Morris, J. S., Yang, G.-Z. and Dunn, M. J. 2011. Image Analysis Tools in Proteomics. eLS, published online 17 Jan 2011.
Dsamou M, Palicki O, Septier C, Chabanet C, Lucchi G, Ducoroy P, Chagnon MC, Morzel M. Salivary Protein Profiles and Sensitivity to the Bitter Taste of Caffeine. Chem Senses. 2011 Aug 25, epub ahead of print.
Fan X, Wang J, Soman KV, Ansari GA, Khan MF. Aniline-induced nitrosative stress in rat spleen: proteomic identification of nitrated proteins. Toxicol Appl Pharmacol. 2011 Aug 15;255(1):103-12.
Fan Y, Murphy TB, Byrne JC, Brennan L, Fitzpatrick JM, Watson RW,. Applying Random Forests to identify biomarker panels in serum 2D-DIGE data for the detection and staging of prostate cancer. J. Proteome Res., 2011, 10 (3), pp 1361–1373.
Faulkner S, Elia G, Hillard M, O'Boyle P, Dunn M, Morris D. Immunodepletion of albumin and immunoglobulin G from bovine plasma. Proteomics, Jun;11(11):2329-35.
Fernandez-Garcia N, Hernandez M, Casado-Vela J, Bru R, Elortza F, P Hedden, Olmos E. Changes to the proteome and targeted metabolites of xylem sap in Brassica oleracea in response to salt stress. Plant, Cell & Environment Volume 34, Issue 5, pages 821–836, May 2011.
Ferry N, Stavroulakis S, Guan W, Davison GM, Bell HA, Weaver RJ, Down RE, Gatehouse JA, Angharad M. Gatehouse R. Molecular interactions between wheat and cereal aphid (Sitobion avenae): Analysis of changes to the wheat proteome. Proteomics, Volume 11, Issue 10, pages 1985–2002, May 2011.
Föcking M, Dicker P, English JA, Schubert KO, Dunn MJ, Cotter DR. Common Proteomic Changes in the Hippocampus in Schizophrenia and Bipolar Disorder and Particular Evidence for Involvement of Cornu Ammonis Regions 2 and 3. Arch Gen Psychiatry. 68(5):477-488.
Földi I, Datki ZL, Szabó Z, Bozsó Z, Penke B, Janáky T. Proteomic study of the toxic effect of oligomeric Aβ1-42 in situ prepared from ‘iso-Aβ1-42’. Journal of Neurochemistry Volume 117, Issue 4, pages 691–702, May 2011.
Franco CF, Santos R, Coelho AV. Proteome characterization of sea star coelomocytes – The innate immune effector cells of echinoderms. Proteomics, Volume 11, Issue 17, pages 3587–3592.
Gao L, Yan X, Li X, Guo G, Hu Y, Ma W, Yan Y. Proteome analysis of wheat leaf under salt stress by two-dimensional difference gel electrophoresis (2D-DIGE). Phytochemistry. 2011 Jul;72(10):1180-91.
Johansson E, Lange S, Jennische E,. Specially processed cereals diet increases plasma levels of active antisecretory factor and up-regulates rat hepatic glutathione S-transferase mu. Nutrition (in press).
Goggin DE, Powles SB, Steadman KJ,. Selection for low or high primary dormancy in Lolium rigidum Gaud seeds results in constitutive differences in stress protein expression and peroxidase activity. Journal of Experimental Botany, J. Exp. Bot. (2011) 62 (3): 1037-1047.
Májek P, Reicheltová Z, Suttnar J, Cermák J, Dyr JE. Plasma proteome changes associated with refractory cytopenia with multilineage dysplasia. Proteome Sci. 2011 Oct 5;9:64.
Nakanishi Y, Fukuda S, Chikayama E, Kimura Y, Ohno H, Kikuchi J,. A dynamic omics approach identifies nutrition-mediated microbial interactions. J Proteome Res. 2011 Feb 4;10(2):824-836.
Prins A, Mukubi JM, Pellny TK, Verrier PJ, Beyene G, Lopes MS, Emami K, Treumann A, Lelarge-Trouverie C, Noctor G, Kunert KJ, Kerchev P, Foyer CH,. Acclimation to high CO(2) in maize is related to water status and dependent on leaf rank. Plant, Cell & Environment, Volume 34, Issue 2, pages 314–331, February 2011
Shah S, Lee YJ, Hannapel DJ, Rao AG,. Protein profiling of the potato petiole under short day and long day photoperiods. J Proteomics 74:212-230.
Theron L, Sayd T, Pinguet J, Chambon C, Robert N, Sainte-Lhoutellier V,. Proteomic analysis of semimembranosus and biceps femoris muscles from Bayonne dry-cured ham. Meat Sci. 2011 May;88(1):82-90.
Tsai I, Tomczyk N, Eckmann J, Composto R, Eckmann D,. Human plasma protein adsorption onto dextranized surfaces: a two-dimensional electrophoresis and mass spectrometry study. Colloids and Surfaces B, Colloids and Surfaces B: Biointerfaces Vol 84, Issue 1, May 2011, Pages 241-252.
Valledor L, Jorrin J,. Back to the basics: Maximizing the information obtained by quantitative two dimensional gel electrophoresis analyses by an appropriate experimental design and statistical analyses. J Proteomics 74:1-186.
Wang H, Ye Y, Pan SY, Zhu GY, Li YW, Fong DW, Yu ZL,. Proteomic identification of proteins involved in the anticancer activities of oridonin in HepG2 cells. Phytomedicine, Jan 15;18(2-3):163-9.
2010
Albrecht D, Kniemeyer O, Brakhage AA, Guthke R,. Missing values in gel-based proteomics. Proteomics 2010, 10, 1202-1211
Aranjuelo I, Molero G, Erice G, Avice JC, Nogues S. Plant physiology and proteomics reveals the leaf response to drought in alfalfa (Medicago sativa L.). J Exp Bot (in press), published on-line 25 Aug.
Arguelles S, Cano M, Machado A, Ayala A,. Effect of aging and oxidative stress on elongation factor-2 in hypothalamus and hypophysis. Mech Ageing Dev. 2011 Jan-Feb;132(1-2):55-64.
Bancel E, Rogniaux H, Debiton C, Chambon C, Branlard G,. Extraction and Proteome Analysis of Starch Granule-Associated Proteins in Mature Wheat Kernel (Triticum aestivum L.). J. Proteome Res. 2010, 9 (6), pp 3299-3310.
Banfi C, Parolari A, Brioschi M, Barcella S, Loardi C, Centenaro C, Alamanni F, Mussoni F, Tremoli E,. Proteomic Analysis of Plasma from Patients Undergoing Coronary Artery Bypass Grafting Reveals a Protease/Antiprotease Imbalance in Favor of the Serpin r1-Antichymotrypsin. J. Proteome Res. 2010, 9 (5), pp 2347-2357.
Barba-Espin G, Diaz-Vivancos P, Clemente-Moreno MJ, Albacete A, Faize L, Faize M, Perez-Alfocea F, Hernandez JA,. Interaction between hydrogen peroxide and plant hormones during germination and the early growth of pea seedlings. Plant Cell Environ. 33:981-994.
Barkhudaryan N, Zakaryan H, Sarukhanyan F, Gabrielyan A, Dosch D, Kellermann J, Lottspeich F,. Hemorphins act as homeostatic agents in response to endotoxin-induced stress. Neurochem Res. 35:925-933.
Beganovic J, Guillot A, van de Guchte M, Jouan A, Gitton C, Loux V, Roy K, Huet S, Monod H, Monnet V,. Characterization of the insoluble proteome of Lactococcus lactis by SDS-PAGE LC-MS/MS leads to the identification of new markers of adaptation of the bacteria to the mouse digestive tract. J. Proteome Res. 2010, 9:677-688.
Bennion D, Charlson ES, Coon E, Misra R. Dissection of beta-barrel outer membrane protein assembly pathways through characterizing BamA POTRA 1 mutants of Escherichia coli. Mol Microbiol. (in press), published on-line 28 June.
Betancourt AM, Mobley JA, Russo J, Lamartiniere CA,. Proteomic Analysis in Mammary Glands of Rat Offspring Exposed In Utero to Bisphenol A. J Proteomics 2010, Apr 18;73(6):1241-53.
Bi `eche C, de Lamballerie M,2 Federighi M, Le Bail A, Tresse O. Proteins involved in Campylobacter jejuni 81-176 recovery after high-pressure treatment. Ann N Y Acad Sci. 2010 Feb;1189:133-8.
Bjarnadottir SG, Hollung K, Faergestad EM, Veiseth-Kent E. Proteome changes in bovine longissimus thoracis muscle during the first 48 h postmortem: shifts in energy status and myofibrillar stability. J Agric Food Chem 58:7408-7414.
Bones J, Byrne JC, O'Donoghue N, McManus C, Scaife C, Boissin H, Nastase A, Rudd PM,. Glycomic and Glycoproteomic Analysis of Serum from Patients with Stomach Cancer Reveals Potential Markers Arising from Host Defence Response Mechanisms. J Proteome Res (In press).
Byerley LO, Leamy L, Tam SW, Chou CW, Ravussin E,. Development of a serum profile for healthy aging. Age (Dordr) 32:497-507.
Bull VH, Fargestad EM, Strozynski M, Thiede B,. Temporal proteome profiling of taxol-induced mitotic arrest and apoptosis. Electrophoresis, 31:1873-1885.
Caperna TJ, Shannona AE, Blomberga LA, Garretta WM, Ramsaya TG,. Identification of protein carbonyls in serum of the fetal and neonatal pig. Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology (July 2010), Volume 156, Issue 3, Pages 189-196.
Chakravarti B, Mallik B, Chakravarti DN,. Proteomics and systems biology: application in drug discovery and development. Methods Mol Biol 662:3-28.
Chen ZY, Brown RL, Damann KE, Cleveland TE,. PR10 expression in maize and its effect on host resistance against Aspergillus flavus infection and aflatoxin production. Mol Plant Pathol 11:69-81.
Chevalier F, Kelly AL,. Proteomic Quantification of Disulfide-Linked Polymers in Raw and Heated Bovine Milk. J Agric Food Chem. 2010, Jun 23;58(12):7437-44.
Chiaramonte F, Anglade P, Baraige F, Gratadoux JJ, Langella P, Champomier-Verges MC, Zagorec M,. Analysis of Lactobacillus sakei mutants selected after adaptation to the gastrointestinal tract of axenic mice. Applied and Environmental Microbiology, May 2010, p. 2932-2939, Vol. 76, No. 9.
Darby IA, Vuillier-Devillers K, Pinault E, Sarrazy V, Lepreux S, Balabaud C, Bioulac-Sage P, Desmoulière A. Proteomic analysis of differentially expressed proteins in peripheral cholangiocarcinoma. Cancer Microenviron. Jun 26;4(1):73-91.
Daszykowski M, Bierczynska-Krzysik A, Silberring J, Walczak B. Chemometrics and Intelligent Laboratory Systems. Volume 104, Issue 1, 15 November 2010, Pages 2-7.
De Souza AI, Cardin S, Wait R, Chung YL, Vijayakumar M, Maguy A, Camm AJ, Nattel S. Proteomic and metabolomic analysis of atrial profibrillatory remodelling in congestive heart failure. J Mol Cell Cardiol. 2010 Nov;49(5):851-63. Epub 2010 Jul 23.
Diomede L, Cassata G, Fiordaliso F, Salio M, Ami D, Natalello A, Doglia SM, De Luigi A, Salmona M. Tetracycline and its analogues protect Caenorhabditis elegans from beta-amyloid-induced toxicity by targeting oligomers. Neurobiol Dis. 2010 Nov;40(2):424-31. Epub 2010 Jul 14.
Donoghue P, Staunton L, Mullen E, Manning G, Ohlendieck K,. DIGE analysis of rat skeletal muscle proteins using nonionic detergent phase extraction of young adult versus aged gastrocnemius tissue. Journal of Proteomics 2010, Jun 16;73(8):1441-53.
Emami K, Morris NJ, Cockell SJ, Golebiowska G, Shu QY, Gatehouse AM,. Changes in protein expression profiles between a low phytic acid rice ( Oryza sativa L. Ssp. japonica) line and its parental line: a proteomic and bioinformatic approach. J Agric Food Chem 58:6912-6922.
Facking M, Dicker P, Connolly N, Hudson L, English J, Dunn M, Cotter D,. Proteomic analysis of hippocampal sub-regions in schizophrenia and bipolar disorder reveals most prominent changes in ca2/3 and implicates abnormalities in clathrin mediated endocytosis. Proteomics, Volume 117, Issue 2, Page 255.
Fernandez-Garcia B, Casado P, Prado MA, Ugarte-Gil LJ, Artime N, Cabal-Hierro L, Calvo E, Lopez JA, Ramos S, Lazo PS,. Proteomic analysis of annexin A2 phosphorylation induced by microtubule interfering agents and kinesin spindle protein inhibitors. J Proteome Res 9:4649-4660.
Garcia MM, Guéant-Rodriguez RM, Pooya S, Brachet P, Alberto JM, Jeannesson E, Maskali F, Gueguen N, Marie PY, Lacolley P, Herrmann M, Juillière Y, Malthiery Y, Guéant JL. Methyl donor deficiency induces cardiomyopathy through altered methylation/acetylation of PGC-1α by PRMT1 and SIRT1. J Pathol. 2011 Nov;225(3):324-35.
Garnier M, Matamoros S, Chevret D, Pilet MF, Leroi F, Tresse O. Cold acclimation and cold shock proteomic responses of the psychrotrophic biopreservative Lactococcus piscium strain CNCM I-4031. Appl Environ Microbiol. 76:8011-8018.
Gaviraghi A, Deriu F, Soggiu A, Galli A, Bonacina C, Bonizzi L, Roncada P,. Proteomics to investigate fertility in bulls. Vet Res Commun 34 Suppl 1:S33-36.
Gelman BB, Nguyen TP,. Synaptic proteins linked to HIV-1 infection and immunoproteasome induction: proteomic analysis of human synaptosomes. J Neuroimmune Pharmacol 5:92-102.
Gerner C, Haudek V, Schandl U, Bayer E, Gundacker N, Hutter HP, Mosgoeller W,. Increased protein synthesis by cells exposed to a 1,800-MHz radio-frequency mobile phone electromagnetic field, detected by proteome profiling. Int Arch Occup Environ Health 83:691-702.
Gerner C, Haudek-Prinz VJ, Lackner A, Losert A, Peter-Vorosmarty B, Lorenz O, Grusch M,. Indications for cell stress in response to adenoviral and baculoviral gene transfer observed by proteome profiling of human cancer cells. Electrophoresis, 31:1822-1832.
Gilad O, Jacobsen S, Stuer-Lauridsen B, Pedersen MB, Garrigues C, Svensson B. Combined transcriptome and proteome analysis of Bifidobacterium animalis subsp. lactis BB-12 grown on xylo-oligosaccharides and a model of their utilisation. Appl Environ Microbiol. 76:7285-7291.
Gogel S, Lange S, Leung KY, Greene ND, Ferretti P (2010) Post-translational regulation of Crmp in developing and regenerating chick spinal cord. Dev Neurobiol 70:456-471.
Goggin DE, Powles SB, Steadman KJ. Selection for low or high primary dormancy in Lolium rigidum Gaud seeds results in constitutive differences in stress protein expression and peroxidase activity. J. Exp. Bot. (2011) 62 (3): 1037-1047.
Grassl J, Scaife C, Polden J, Daly CN, Iacovella MG, Dunn MJ, Clyne RK. Analysis of the budding yeast pH 4-7 proteome in meiosis. Proteomics 10:506-519.
Hannan NJ, Stephens AN, Rainczuk A, Hincks C, Rombauts LJ, Salamonsen LA,. 2D-DiGE analysis of the human endometrial secretome reveals differences between receptive and nonreceptive states in fertile and infertile women. J Proteome Res 9:6256-6264.
Hatsugai M, Kurokawa MS, Kouro T, Nagai K, Arito M, Masuko K, Suematsu N, Okamoto K, Itoh F, Kato T,. Protein profiles of peripheral blood mononuclear cells are useful for differential diagnosis of ulcerative colitis and Crohn's disease. J Gastroenterol 45:488-500.
Heywood WE, Madgett TE, Wang D, Wallington A, Hogg J, Mills K, Avent ND. 2D DIGE analysis of maternal plasma for potential biomarkers of Down Syndrome. Proteome Sci. 2011; 9: 56.
Hori C, Igarashi K, Katayama A, Samejima M. Effects of xylan and starch on secretome of the basidiomycete Phanerochaete chrysosporium grown on cellulose. FEMS Microbiol Lett. 2011 Aug;321(1):14-23.
Huang W, Bi T, Sun W. Comparative analysis of panicle proteomes of two upland rice varieties upon hyper-osmotic stress. Front. Biol. 2010, 5(6): 546–555.
Hosakoa M, Mutoa T, Nakamuraa Y, Tsutab K, Tochigic N, Tsudab H, Asamurad H, Tomonagae T, Kawaif A, Kondo T. Proteomic study of malignant pleural mesothelioma by laser microdissection and two-dimensional difference gel electrophoresis identified cathepsin D as a novel candidate for a differential diagnosis biomarker. epub ahead of print 5 Oct 2011.
Irigoyen C, Soria J, Acera A, Suarez-Cortes TM, Mendicute J,. Proteomic Analysis of Lens Soluble Fraction in Different Types of Cataracts. Association for Research in Vision and Ophthalmology 2010 meeting abstract and oral presentation, May 2010.
Islam S, Ma W, Yan G, Gao L, Appels R. Differential recovery of lupin proteins from the gluten matrix in lupin-wheat bread as revealed by mass spectrometry and two-dimensional electrophoresis. J Agric Food Chem. 2011 Jun 22;59(12):6696-704.
Johansson E, Lange S, Jennische E. Specially processed cereals diet increases plasma levels of active antisecretory factor and up-regulates rat hepatic glutathione S-transferase mu. Nutrition. 2011 Sep;27(9):949-54.
Kachman MT, Hurley MC, Thiele T, Srinivas G, Aronoff DM,. Comparative analysis of the extracellular proteomes of two Clostridium sordellii strains exhibiting contrasting virulence. Anaerobe, 2010 Aug;16(4):454-60.
Kandpal RP. Tyrosine Kinase-Deficient EphB6 Receptor-dependent Alterations in Proteomic Profiles of Invasive Breast Carcinoma Cells as Determined by Difference Gel Electrophoresis. Cancer Genomics and Proteomics September 1, 2010 vol. 7 no. 5 253-260.
Kawatani M, Takayama H, Muroi M, Kimura S, Maekawa T, Osada H. Identification of a Small-Molecule Inhibitor of DNA Topoisomerase II by Proteomic Profiling. Chemistry & Biology, Volume 18, Issue 6, 743-751.
Keidel EM, Dosch D, Brunner A, Kellermann J, Lottspeich F. Evaluation of protein loading techniques and improved separation in OFFGEL isoelectric focusing. Electrophoresis. 2011 Jun;32(13):1659-66.
Kelly J, Kavanagh K. Caspofungin primes the immune response of the larvae of Galleria mellonella and induces a non-specific antimicrobial response. J Med Microbiol. 2011 Feb;60(Pt 2):189-96.
Kilic NK, Stensballe A, Otzen DE, Donmez G,. Proteomic changes in response to chromium(VI) toxicity in Pseudomonas aeruginosa. Bioresour Technol, 101:2134-2140.
Kim Y, Islam N, Moss BJ, Nandakumar MP, Marten MR. Autophagy induced by rapamycin and carbon-starvation have distinct proteome profiles in Aspergillus nidulans. Biotechnology and Bioengineering, Volume 108, Issue 11, pages 2705–2715.
Kirschstein T, Mikkat S, Mikkat U, Bender R, Kreutzer M, Schulz R, Köhling R, Glocker MO. The 27-kDa heat shock protein (HSP27) is a reliable hippocampal marker of full development of pilocarpine-induced status epilepticus. Epilepsy Res. 2011 Sep 13. Epub ahead of print.
Knoll JE, Ramos ML, Zeng Y, Holbrook CC, Chow M, Chen S, Maleki S, Bhattacharya A, Ozias-Akins P. TILLING for allergen reduction and improvement of quality traits in peanut (Arachis hypogaea L.). BMC Plant Biol. 2011 May 12;11:81.
Kristiansen LC, Jacobsen S, Jessen F, Jorgensen BM,. Using a cross-model loadings plot to identify protein spots causing 2-DE gels to become outliers in PCA. Proteomics, Volume 10, Issue 8, pages 1721-1723.
Kultima K, Sköld K, Borén M. Biomarkers of disease and post-mortem changes - Heat stabilization, a necessary tool for measurement of protein regulation. J Proteomics. 2011 Jun 17. Epub ahead of print.
Kuramitsu Y, Hayashi E, Okada F, Zhang X, Ueyama Y, Nakamura K. Two-dimensional gel electrophoresis using immobilized pH gradient strips and FlamingoTM fluorescent gel stain identified non-nuclear proteins possibly related to malignant tumour progression. Anticancer Res. 2011 Apr;31(4):1259-63.
Laino P, Shelton D, Finnie C, De Leonardis AM, Mastrangelo AM, Svensson B, Lafiandra D, Masci S,. Comparative proteome analysis of metabolic proteins from seeds of durum wheat (cv. Svevo) subjected to heat stress. Proteomics, 10:2359-2368.
Lamblin N, Ratajczak P, Hot D, Dubois E, Chwastyniak M, Beseme O, Drobecq H, Lemoine Y, Koussa M, Amouyel P, Pinet F,. Profile of macrophages in human abdominal aortic aneurysms: a transcriptomic, proteomic, and antibody protein array study. J. Proteome Res., 9:3720-3729.
Lau TY, Power KA, Dijon S, de Gardelle I, McDonnell S, Duffy MJ, Pennington SR, Gallagher WM,. Prioritization of candidate protein biomarkers from an in vitro model system of breast tumor progression toward clinical verification. J. Proteome Res., 9:1450-1459.
Lewis C, Ohlendieck K,. Proteomic profiling of naturally protected extraocular muscles from the 3 dystrophin-deficient mdx mouse. Biochem Biophys Res Commun 2010, Jun 11;396(4):1024-9.
Ling XB, Park JL, Carroll T, Nguyen KD, Lau K, Macaubas C, Chen E, Lee T, Sandborg C, Milojevic D, Kanegaye JT, Gao S, Burns J, Schilling J, Mellins ED. Plasma profiles in active systemic juvenile idiopathic arthritis: biomarkers and biological implications. Proteomics, 2010 Dec;10(24):4415-30.
Lorenz K, Bader M, Klaus A, Weiss W, Görg A, Hofmann T. Orosensory stimulation effects on human saliva proteome. J Agric Food Chem. 2011 Sep 28;59(18):10219-31.
Lu J, Arai C, Md AB, Ihara M. Plasmodium berghei proteome changes in response to SSJ-183 treatment. Bioorg Med Chem. 2011 Jul 1;19(13):4144-7. Epub 2011 May 11.
Lui JK, Lipscombe R, Arthur PG. Detecting changes in the thiol redox state of proteins following a decrease in oxygen concentration using a dual labeling technique. J. Proteome Res., 9:383-392.
Magdeldin S, Li H, Yoshida Y, Enany S, Zhang Y, Xu B, Fujinaka H, Yaoita E, Yamamoto T. Comparison of two dimensional electrophoresis mouse colon proteomes before and after knocking out Aquaporin 8. J Proteomics. 2010 Sep 10;73(10):2031-40.
Marco-Ramell A, Bassols A,. Enrichment of low-abundance proteins from bovine and porcine serum samples for proteomic studies. Res Vet Sci. Volume 89, Issue 3, Pages 340-343.
McManus CA, Polden J, Cotter DR, Dunn MJ,. Two-dimensional reference map for the basic proteome of the human dorsolateral prefrontal cortex (dlPFC) of the prefrontal lobe region of the brain. Proteomics, Volume 10, Issue 13, pages 2551-2555.
Morris JS, Clark BN, Wei W, Gutstein HB,. Evaluating the performance of new approaches to spot quantification and differential expression in 2-dimensional gel electrophoresis studies. J. Proteome Res., 9:595-604.
MottT, Soler M, Grigsby S, Medley R, Whitlock GC,. Identification of potential diagnostic markers among Burkholderia cenocepacia and B. multivorans supernatants. Journal of Clinical Microbiology, p. 4186-4192, Vol. 48, No. 11.
Murgiano L, D'Alessandro A, Egidi MG, Crisà A, Prosperini G, Timperio AM, Valentini A, Zolla L. A proteomics and transcriptomics investigation on longissimus muscles in Large White and Casertana pig breeds. J. Proteome Res., 2010, 9 (12), pp 6450–6466.
Nguyen VP, Hanna G, Rodrigues N, Pizzuto K, Yang E, Van Slyke P, Kim H, Chen SH, Dumont DJ,. Differential Proteomic Analysis of Lymphatic, Venous, and Arterial Endothelial Cells Extracted from Bovine Mesenteric Vessels. Proteomics 2010, Apr;10(8):1658-72.
Olson FJ, Sihlbom C, Davidsson P, Hulthe J, Fagerberg B, Bergstrom G. Consistent differences in protein distribution along the longitudinal axis in symptomatic carotid atherosclerotic plaques. Biochem Biophys Res Commun. 2010 Oct 29;401(4):574-80.
Page D, Gouble B, Valot B, Bouchet JP, Callot C, Kretzschmar A, Causse M, Renard CM, Faurobert M,. Protective proteins are differentially expressed in tomato genotypes differing for their tolerance to low-temperature storage. Planta 232:483-500.
Paradis F, Moore HS, Pasternak JA, Novak S, Dyck MK, Dixon WT, Foxcroft GR,. Pig preovulatory oocytes modulate cumulus cell protein and gene expression in vitro. Mol Cell Endocrinol. 2010, May 14;320(1-2):87-96.
Paule SG, Airey LM, Li Y, Stephens AN, Nie G. Proteomic Approach Identifies Alterations in Cytoskeletal Remodelling Proteins during Decidualization of Human Endometrial Stromal Cells. J Proteome Res, 2010 Nov 5;9(11):5739-47.
Pennington K, Peng J, Hung C-C, Banks RE, Robinson PA,. Differential Effects of Wild-Type and A53T Mutant Isoform of Alpha-Synuclein on the Mitochondrial Proteome of Differentiated SH-SY5Y Cells. J. Proteome Res., 2010, 9 (5), pp 2390-2401.
Polaskova V, Kapur A, Khan A, Molloy MP, Baker MS,. High-abundance protein depletion: comparison of methods for human plasma biomarker discovery. Electrophoresis, 31:471-482.
Ponce J, Brea D, Carrascal M, Guirao V, DeGregorio-Rocasolano N, Sobrino T, Castillo J, Dávalos A, Gasull T,. The effect of simvastatin on the proteome of detergent-resistant membrane domains: Decreases of specific proteins previously related to cytoskeleton regulation, calcium homeostasis and cell fate. Proteomics, Volume 10 Issue 10, Pages 1954-1965.
Portmann-Lanz CB, Schoeberlein A, Portmann R, Mohr S, Rollini P, Sager R, Surbek DV,. Turning placenta into brain: placental mesenchymal stem cells differentiate into neurons and oligodendrocytes. Am J Obstet Gynecol. 2010, Mar;202(3):294.e1-294.e11.
Qureshi MI, D'Amici GM, Fagioni M, Rinalducci S, Zolla L,. Iron stabilizes thylakoid protein-pigment complexes in Indian mustard during Cd-phytoremediation as revealed by BN-SDS-PAGE and ESI-MS/MS. J Plant Physiol. 2010 Jul 1;167(10):761-70.
Raghunathan VK, Grant MH, Ellis EM,. Changes in protein expression associated with chronic in vitro exposure of hexavalent chromium to osteoblasts and monocytes: a proteomic approach. J Biomed Mater Res A 92:615-625.
Recorbet G, Valot B, Robert F, Gianinazzi-Pearson V, Dumas-Gaudot E,. Identification of in planta-expressed arbuscular mycorrhizal fungal proteins upon comparison of the root proteomes of Medicago truncatula colonised with two Glomus species. Fungal Genet Biol. 2010, Jul;47(7):608-18.
Robinson AA, Dunn MJ, McCormack A, dos Remedios C, Rose ML,. Protective effect of phosphorylated Hsp27 in coronary arteries through actin stabilization. J. Mol. Cell Cardiol. 49:370-379.
Roma-Rodrigues C, Santos PM, Benndorf D, Rapp E, Sa-Correia I,. Response of Pseudomonas putida KT2440 to phenol at the level of membrane proteome. J Proteomics 2010, Jun 16;73(8):1461-78.
Siciliano A, Turrini F, Bertoldi M, Matte A, Pantaleo A, Olivieri O, De Franceschi L,. Deoxygenation affects tyrosine phosphoproteome of red cell membrane from patients with sickle cell disease. Blood Cells Mol Dis. 2010, Apr 15;44(4):233-42.
Silva E, O'Gorman M, Becker S, Auer G, Eklund A, Grunewald J, Wheelock AM,. In the eye of the beholder: does the master see the SameSpots as the novice? J. Proteome Res., 9:1522-1532.
Sissener NH, Martin SA, Cash P, Hevroy EM, Sanden M, Hemre GI,. Proteomic profiling of liver from Atlantic salmon (Salmo salar) fed genetically modified soy compared to the near-isogenic non-GM line. Mar Biotechnol (NY) 12:273-281.
Slany A, Haudek VJ, Zwickl H, Gundacker NC, Grusch M, Weiss TS, Seir K, Rodgarkia-Dara C, Hellerbrand C, Gerner C,. Cell characterization by proteome profiling applied to primary hepatocytes and hepatocyte cell lines Hep-G2 and Hep-3B. J. Proteome Res. 9:6-21.
Stephan C, Kohl M, Turewicz M, Podwojski K, Meyer HE, Eisenacher M,. Using Laboratory Information Management Systems as central part of a proteomics data workflow. Proteomics 2010, 10:1230-1249.
Stephens AN, Hannan NJ, Rainczuk A, Meehan KL, Chen J, Nicholls PK, Rombauts LJ, Stanton PG, Robertson DM, Salamonsen LA,. Post-translational modifications and protein-specific isoforms in endometriosis revealed by 2D DIGE. J Proteome Res 9:2438-2449.
Stephens AN, Pereira-Fantini PM, Wilson G, Taylor RG, Rainczuk A, Meehan KL, Sourial M, Fuller PJ, Stanton PG, Robertson DM, Bines JE,.Proteomic analysis of the intestinal adaptation response reveals altered expression of fatty acid binding proteins following massive small bowel resection. J Proteome Res 9:1437-1449.
Suarez G, Sierra JC, Erova TE, Sha J, Horneman AJ, Chopra AK,. A type VI secretion system effector protein, VgrG1, from Aeromonas hydrophila that induces host cell toxicity by ADP ribosylation of actin. J. Bacteriol 192:155-168.
Telleria J, Biron DG, Brizard JP, Demettre E, Seveno M, Barnabe C, Ayala FJ, Tibayrenc M,. Phylogenetic character mapping of proteomic diversity shows high correlation with subspecific phylogenetic diversity in Trypanosoma cruzi. Proc Natl Acad Sci U S A 107:20411-20416.
Teyssier C, Grondin C, Bonhomme L, Lomenech AM, Vallance M, Morabito D, Label P, Lelu-Walter MA. Increased gelling agent concentration promotes somatic embryo maturation in hybrid larch (Larix x eurolepsis): a 2-DE proteomic analysis. Physiol Plant, (in press), published on-line 23 Oct.
Thambisetty M, Simmons A, Velayudhan L, Hye A, Campbell J, Zhang Y, Wahlund LO, et al,. Association of plasma clusterin concentration with severity, pathology, and progression in Alzheimer disease. Arch. Gen. Psychiatry, 67:739-748.
Tweedle EM,2, Khattak I, Ang CW, Nedjadi T, Jenkins R, Park BK, Kalirai H, Dodson A, Azadeh B, Terlizzo M, Grabsch H, Mueller W, Myint S, Clark P, Wong H, Greenhalf W, Neoptolemos JP, Rooney PS, Costello E,. Low molecular weight heat shock protein HSP27 is a prognostic indicator in rectal cancer but not colon cancer. Gut 2010;59:1501-1510
Wang Y, Carolan JC, Hao F, Nicholson JK, Wilkinson TL, Douglas AE,. Integrated metabonomic-proteomic analysis of an insect-bacterial symbiotic system. J. Proteome Res, 9:1257-1267.
Wasinpiyamongkol L, Patramool S, Luplertlop N, Surasombatpattana P, Doucoure S, Mouchet F, Séveno M, Remoue F, Demettre E, Brizard J-P, Jouin P, Biron DG, Thomas F, Misse D,. Blood-feeding and immunogenic Aedes aegypti saliva proteins. Proteomics, Volume 10, Issue 10, Pages 1906 - 1916.
Xu C, Huang B,. Differential proteomic response to heat stress in thermal Agrostis scabra and heat-sensitive Agrostis stolonifera. Physiol Plant 139:192-204.
Xu C, Huang B,. Differential proteomic responses to water stress induced by PEG in two creeping bentgrass cultivars differing in stress tolerance. J Plant Physiol 167:1477-1485.
Yang F, Jensen JD, Svensson B, JÃrgensen HJ, Collinge DB, Finnie C. Analysis of early events in the interaction between Fusarium graminearum and the susceptible barley (Hordeum vulgare) cultivar Scarlett. Proteomics. 2010 Nov;10(21):3748-55.
Yang F, Jensen JD, Spliid NH, Svensson B, Jacobsen S, Jorgensen LN, Jorgensen HJ, Collinge DB, Finnie C,. Investigation of the effect of nitrogen on severity of Fusarium head blight in barley. J Proteomics, 73:743-752.
You J, Fitzgerald A, Cozzi PJ, Zhao Z, Graham P, Russell PJ, Walsh BJ, Willcox M, Zhong L, Wasinger V, Li Y,. Post-translation modification of proteins in tears. Electrophoresis, Volume 31, Issue 11, pages 1853-1861.
Zuber H, Davidian JC, Aubert G, Aime D, Belghazi M, Lugan R, Heintz D, Wirtz M, Hell R, Thompson R, Gallardo K. The seed composition of Arabidopsis mutants for the group 3 sulfate transporters indicates a role in sulfate translocation within developing seeds. Plant Physiol 154:913-926.
2009
Aloui A, Recorbet G, Gollotte A, Robert F, Valot B, Gianinazzi-Pearson V, Aschi-Smiti S, Dumas-Gaudot E (2009) On the mechanisms of cadmium stress alleviation in Medicago truncatula by arbuscular mycorrhizal symbiosis: a root proteomic study. Proteomics 9:420-433
Alvarez S, Berla BM, Sheffield J, Cahoon RE, Jez JM, Hicks LM (2009) Comprehensive analysis of the Brassica juncea root proteome in response to cadmium exposure by complementary proteomic approaches. Proteomics 9:2419-2431
Baudouin-Cornu P, Lagniel G, Chedin S, Labarre J (2009) Development of a new method for absolute protein quantification on 2-D gels. Proteomics 9:4606-4615
Bech-Serra JJ, Borthwick A, Colome N, Albar JP, Wells M, Sanchez del Pino M, Canals F (2009) A multi-laboratory study assessing reproducibility of a 2D-DIGE differential proteomic experiment. J Biomol Tech 20:293-296
Bonhomme L, Monclus R, Vincent D, Carpin S, Claverol S, Lomenech AM, Labas V, Plomion C, Brignolas F, Morabito D (2009) Genetic variation and drought response in two Populus x euramericana genotypes through 2-DE proteomic analysis of leaves from field and glasshouse cultivated plants. Phytochemistry 70:988-1002
Bonhomme L, Monclus R, Vincent D, Carpin S, Lomenech AM, Plomion C, Brignolas F, Morabito D (2009) Leaf proteome analysis of eight Populus xeuramericana genotypes: genetic variation in drought response and in water-use efficiency involves photosynthesis-related proteins. Proteomics 9:4121-4142
Bortner JD, Das A, Umstead TM, Freeman WM, Somiari R, Aliaga C, Phelps DS, El-Bayoumy K (2009) Down-Regulation of 14-3-3 Isoforms and Annexin A5 Proteins in Lung Adenocarcinoma - Induced by the Tobacco-Specific Nitrosamine NNK in the A/J Mouse Revealed by Proteomic Analysis. J Proteome Res 8:4050-4061
Bowick GC, Spratt HM, Hogg AE, Endsley JJ, Wiktorowicz JE, Kurosky A, Luxon BA, Gorenstein DG, Herzog NK (2009) Analysis of the differential host cell nuclear proteome induced by attenuated and virulent hemorrhagic arenavirus infection. J Virol 83:687-700
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Cash P, Argo E (2009) Analysis of bacterial proteins by 2DE. Methods Mol Biol 519:131-144
Chen J, Hannan N, Mak Y, Nicholls P, Zhang J, Rainczuk A, Stanton P, Robertson D, Salamonsen L, Stephens A (2009) Proteomic Characterization of Mid-Proliferative and Mid-Secretory Human Endometrium. J Proteome Res 8:2032-2044
Cilia M, Fish T, Yang X, McLaughlin M, Thannhauser TW, Gray S (2009) A comparison of protein extraction methods suitable for gel-based proteomic studies of aphid proteins. J Biomol Tech 20:201-215
Deighton RF, Short DM, McGregor RJ, Gow AJ, Whittle IR, McCulloch J (2009) The utility of functional interaction and cluster analysis in CNS proteomics. J Neurosci Methods 180:321-329
Desclos M, Etienne P, Coquet L, Jouenne T, Bonnefoy J, Segura R, Reze S, Ourry A, Avice JC (2009) A combined 15N tracing/proteomics study in Brassica napus reveals the chronology of proteomics events associated with N remobilisation during leaf senescence induced by nitrate limitation or starvation. Proteomics 9:3580-3608
Diz AP, Dudley E, MacDonald BW, Pina B, Kenchington EL, Zouros E, Skibinski DO (2009) Genetic variation underlying protein expression in eggs of the marine mussel Mytilus edulis. Mol Cell Proteomics 8:132-144
Endoh T, Engel JN (2009) CbpA: a polarly localized novel cAMP-binding protein in Pseudomonas aeruginosa. J Bacteriol 191:7193-7205
Fagioni M, D'Amici GM, Timperio AM, Zolla L (2009) Proteomic analysis of multiprotein complexes in the thylakoid membrane upon cadmium treatment. J Proteome Res 8:310-326
Fagioni M, Zolla L (2009) Does the different proteomic profile found in apical and basal leaves of spinach reveal a strategy of this plant toward cadmium pollution response? J Proteome Res 8:2519-2529
Fang Q, Strand A, Law W, Faca VM, Fitzgibbon MP, Hamel N, Houle B, Liu X, May DH, Poschmann G, Roy L, Stuhler K, Ying W, Zhang J, Zheng Z, Bergeron JJ, Hanash S, He F, Leavitt BR, Meyer HE, Qian X, McIntosh MW (2009) Brain-specific proteins decline in the cerebrospinal fluid of humans with Huntington disease. Mol Cell Proteomics 8:451-466
Gannon J, Doran P, Kirwan A, Ohlendieck K (2009) Drastic increase of myosin light chain MLC-2 in senescent skeletal muscle indicates fast-to-slow fibre transition in sarcopenia of old age. Eur J Cell Biol 88:685-700
Garcia V, Stevens R, Gil L, Gilbert L, Gest N, Petit J, Faurobert M, et al. (2009) An integrative genomics approach for deciphering the complex interactions between ascorbate metabolism and fruit growth and composition in tomato. C R Biol 332:1007-1021
Gibson DS, Blelock S, Curry J, Finnegan S, Healy A, Scaife C, McAllister C, Pennington S, Dunn M, Rooney M (2009) Comparative analysis of synovial fluid and plasma proteomes in juvenile arthritis--proteomic patterns of joint inflammation in early stage disease. J Proteomics 72:656-676
Gonzalez H, Ottervald J, Nilsson KC, Sjogren N, Miliotis T, Von Bahr H, Khademi M, Eriksson B, Kjellstrom S, Vegvari A, Harris R, Marko-Varga G, Borg K, Nilsson J, Laurell T, Olsson T, Franzen B (2009) Identification of novel candidate protein biomarkers for the post-polio syndrome - implications for diagnosis, neurodegeneration and neuroinflammation. J Proteomics 71:670-681
Grassl J, Westbrook JA, Robinson A, Boren M, Dunn MJ, Clyne RK (2009) Preserving the yeast proteome from sample degradation. Proteomics 9:4616-4626
Grebaut P, Chuchana P, Brizard JP, Demettre E, Seveno M, Bossard G, Jouin P, Vincendeau P, Bengaly Z, Boulange A, Cuny G, Holzmuller P (2009) Identification of total and differentially expressed excreted-secreted proteins from Trypanosoma congolense strains exhibiting different virulence and pathogenicity. Int J Parasitol 39:1137-1150
Grove H, Hollung K, Moldestad A, Faergestad EM, Uhlen AK (2009) Proteome Changes in Wheat Subjected to Different Nitrogen and Sulfur Fertilizations. J Agric Food Chem (In Press)
Hannan NJ, Stoikos CJ, Stephens AN, Salamonsen LA (2009) Depletion of high-abundance serum proteins from human uterine lavages enhances detection of lower-abundance proteins. J Proteome Res 8:1099-1103
Haudek VJ, Slany A, Gundacker NC, Wimmer H, Drach J, Gerner C (2009) Proteome maps of the main human peripheral blood constituents. J Proteome Res 8:3834-3843
Holloway KV, O'Gorman M, Woods P, Morton JP, Evans L, Cable NT, Goldspink DF, Burniston JG (2009) Proteomic investigation of changes in human vastus lateralis muscle in response to interval-exercise training. Proteomics 9:5155-5174
Jia X, Veiseth-Kent E, Grove H, Kuziora P, Aass L, Hildrum KI, Hollung K (2009) Peroxiredoxin-6--a potential protein marker for meat tenderness in bovine longissimus thoracis muscle. J Anim Sci 87:2391-2399
Joss JL, Molloy MP, Hinds L, Deane E (2009) A longitudinal study of the protein components of marsupial milk from birth to weaning in the tammar wallaby (Macropus eugenii). Dev Comp Immunol 33:152-161
Kang Y, Techanukul T, Mantalaris A, Nagy JM (2009) Comparison of three commercially available DIGE analysis software packages: minimal user intervention in gel-based proteomics. J Proteome Res 8:1077-1084
Karp NA, Lilley KS (2009) Investigating sample pooling strategies for DIGE experiments to address biological variability. Proteomics 9:388-397
Kilpatrick LM, Stephens AN, Hardman BM, Salamonsen LA, Li Y, Stanton PG, Nie G (2009) Proteomic Identification of Caldesmon as a Physiological Substrate of Proprotein Convertase 6 in Human Uterine Decidual Cells Essential for Pregnancy Establishment. J Proteome Res 8:4983-4992
Kim SM, Kumar V, Lin YQ, Karunanithi S, Ramaswami M (2009) Fos and Jun potentiate individual release sites and mobilize the reserve synaptic vesicle pool at the Drosophila larval motor synapse. Proc Natl Acad Sci U S A 106:4000-4005
Lam L, Tsoutsman T, Arthur J, Semsarian C (2009) Differential protein expression profiling of myocardial tissue in a mouse model of hypertrophic cardiomyopathy. J Mol Cell Cardiol (In Press)
Marcellin E, Chen WY, Nielsen LK (2009) Understanding plasmid effect on hyaluronic acid molecular weight produced by Streptococcus equi subsp. zooepidemicus. Metab Eng 12:62-69
Martinez-Esteso MJ, Selles-Marchart S, Vera-Urbina JC, Pedreno MA, Bru-Martinez R (2009) Changes of defense proteins in the extracellular proteome of grapevine (Vitis vinifera cv. Gamay) cell cultures in response to elicitors. J Proteomics 73:331-341
Monge M, Doll A, Colas E, Gil-Moreno A, Castellvi J, Garcia A, Colome N, Perez-Benavente A, Pedrola N, Lopez-Lopez R, Dolcet X, Ramon y Cajal S, Xercavins J, Matias-Guiu X, Canals F, Reventos J, Abal M (2009) Subtractive proteomic approach to the endometrial carcinoma invasion front. J Proteome Res 8:4676-4684
O'Connell K, Ohlendieck K (2009) Proteomic DIGE analysis of the mitochondria-enriched fraction from aged rat skeletal muscle. Proteomics 24:5509-5524
Pedreschi R, Hertog M, Robben J, Lilley KS, Karp NA, Baggerman G, Vanderleyden J, Nicolai B (2009) Gel-based proteomics approach to the study of metabolic changes in pear tissue during storage. J Agric Food Chem 57:6997-7004
Robinson AA, Westbrook JA, English JA, Boren M, Dunn MJ (2009) Assessing the use of thermal treatment to preserve the intact proteomes of post-mortem heart and brain tissue. Proteomics 9:4433-4444
Romesser PB, Perlman DH, Faller DV, Costello CE, McComb ME, Denis GV (2009) Development of a malignancy-associated proteomic signature for diffuse large B-cell lymphoma. Am J Pathol 175:25-35
Sheoran IS, Ross AR, Olson DJ, Sawhney VK (2009) Differential expression of proteins in the wild type and 7B-1 male-sterile mutant anthers of tomato (Solanum lycopersicum): a proteomic analysis. J Proteomics 71:624-636
Stella CL, Bennett MR, Devarajan P, Greis K, Wyder M, Macha S, Rao M, Jodicke C, Moussa H, How HY, Myatt L, Webster R, Sibai BM (2009) Preterm labor biomarker discovery in serum using 3 proteomic profiling methodologies. Am J Obstet Gynecol 201:387 e381-313
Takeshita M, Ishida Y, Akamatsu E, Ohmori Y, Sudoh M, Uto H, Tsubouchi H, Kataoka H (2009) Proanthocyanidin from blueberry leaves suppresses expression of subgenomic hepatitis C virus RNA. J Biol Chem 284:21165-21176
Timperio AM, D'Alessandro A, Pariset L, D'Amici GM, Valentini A, Zolla L (2009) Comparative proteomics and transcriptomics analyses of livers from two different Bos taurus breeds: "Chianina and Holstein Friesian". J Proteomics 73:309-322
Tsolakos N, Techanukul T, Wallington A, Zhao Y, Jones C, Nagy J, Wheeler JX (2009) Comparison of two combinations of cyanine dyes for prelabelling and gel electrophoresis. Proteomics 9:1727-1730
Umstead TM, Freeman WM, Chinchilli VM, Phelps DS (2009) Age-related changes in the expression and oxidation of bronchoalveolar lavage proteins in the rat. Am J Physiol Lung Cell Mol Physiol 296:L14-29
Valcu CM, Junqueira M, Shevchenko A, Schlink K (2009) Comparative proteomic analysis of responses to pathogen infection and wounding in Fagus sylvatica. J Proteome Res 8:4077-4091
Yang F, Jensen JD, Spliid NH, Svensson B, Jacobsen S, Jorgensen LN, Jorgensen HJ, Collinge DB, Finnie C (2009) Investigation of the effect of nitrogen on severity of Fusarium Head Blight in barley. J Proteomics 73:743-752
Zhou S, Sauve R, Thannhauser TW (2009) Proteome changes induced by aluminium stress in tomato roots. J Exp Bot 60:1849-1857
2008
Burniston JG (2008) Changes in the rat skeletal muscle proteome induced by moderate-intensity endurance exercise. Biochim Biophys Acta 1784: 1077-1086.
Cieniewski-Bernard C, Acosta A, Dubois E, Lamblin N, Beseme O, Chwastyniak M, Amouyel P, Bauters C, Pinet F (2008) Proteomic analysis in cardiovascular diseases. Clin Exp Pharmacol Physiol 35: 362-366.
Desclos M, Dubousset L, Etienne P, Le Caherec F, Satoh H, Bonnefoy J, Ourry A, Avice JC (2008) A proteomic profiling approach to reveal a novel role of Brassica napus drought 22 kD/water-soluble chlorophyll-binding protein in young leaves during nitrogen remobilization induced by stressful conditions. Plant Physiol 147: 1830-1844.
Dhiman M, Nakayasu ES, Madaiah YH, Reynolds BK, Wen JJ, Almeida IC, Garg NJ (2008) Enhanced nitrosative stress during Trypanosoma cruzi infection causes nitrotyrosine modification of host proteins: implications in Chagas' disease. Am J Pathol 173: 728-740.
Fanous A, Weiss W, Gorg A, Jacob F, Parlar H (2008) A proteome analysis of the cadmium and mercury response in Corynebacterium glutamicum. Proteomics.
Gillet LC, Namoto K, Ruchti A, Hoving S, Boesch D, Inverardi B, Mueller D, Coulot M, Schindler P, Schweigler P, Bernardi A, Gil-Parrado S (2008) In-cell selectivity profiling of serine protease inhibitors by activity-based proteomics. Mol Cell Proteomics 7: 1241-1253.
Grove H, Jorgensen BM, Jessen F, Sondergaard I, Jacobsen S, Hollung K, Indahl U, Faergestad EM (2008) Combination of Statistical Approaches for Analysis of 2-DE Data Gives Complementary Results. J Proteome Res. (In Press)
Joss JL, Molloy MP, Hinds L, Deane E (2008) A longitudinal study of the protein components of marsupial milk from birth to weaning in the tammar wallaby (Macropus eugenii). Dev Comp Immunol 33: 152-161.
Karp NA, Feret R, Rubtsov DV, Lilley KS (2008) Comparison of DIGE and post-stained gel electrophoresis with both traditional and SameSpots analysis for quantitative proteomics. Proteomics 8: 948-960.
Meyer VS, Kastenmuller W, Gasteiger G, Franz-Wachtel M, Lamkemeyer T, Rammensee HG, Stevanovic S, Sigurdardottir D, Drexler I (2008) Long-term immunity against actual poxviral HLA ligands as identified by differential stable isotope labeling. J Immunol 181: 6371-6383.
Mikhaylova O, Ignacak ML, Barankiewicz TJ, Harbaugh SV, Yi Y, Maxwell PH, Schneider M, Van Geyte K, Carmeliet P, Revelo MP, Wyder M, Greis KD, Meller J, Czyzyk-Krzeska MF (2008) The von Hippel-Lindau tumor suppressor protein and Egl-9-Type proline hydroxylases regulate the large subunit of RNA polymerase II in response to oxidative stress. Mol Cell Biol 28: 2701-2717.
Morris JS, Clark BN, Gutstein HB (2008) Pinnacle: a fast, automatic and accurate method for detecting and quantifying protein spots in 2-dimensional gel electrophoresis data. Bioinformatics 24: 529-536.
Pandhal J, Wright PC, Biggs CA (2008) Proteomics with a pinch of salt: A cyanobacterial perspective. Saline Systems 4:1.
Panopoulos P, Mauro VP (2008) Antisense Masking Reveals Contributions of mRNA-rRNA Base Pairing to Translation of Gtx and FGF2 mRNAs. J Biol Chem 283: 33087-33093.
Rye MB, Faergestad EM, Martens H, Wold JP, Alsberg BK (2008) An improved pixel-based approach for analyzing images in two-dimensional gel electrophoresis. Electrophoresis 29: 1382-1393.
Seferovic MD, Krughkov V, Pinto D, Han VK, Gupta MB (2008) Quantitative 2-D gel electrophoresis-based expression proteomics of albumin and IgG immunodepleted plasma. J Chromatogr B Analyt Technol Biomed Life Sci 865: 147-152.
Sihlbom C, Kanmert I, Bahr H, Davidsson P (2008) Evaluation of the Combination of Bead Technology with SELDI-TOF-MS and 2-D DIGE for Detection of Plasma Proteins. J Proteome Res 7: 4191-4198.
Spiess PC, Morin D, Jewell WT, Buckpitt AR (2008) Measurement of protein sulfhydryls in response to cellular oxidative stress using gel electrophoresis and multiplexed fluorescent imaging analysis. Chem Res Toxicol 21: 1074-1085.
Starosta V, Pazdrak K, Boldogh I, Svider T, Kurosky A (2008) Lipoxin A4 counterregulates GM-CSF signaling in eosinophilic granulocytes. J Immunol 181: 8688-8699.
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Yang X, Thannhauser TW, Burrows M, Cox-Foster D, Gildow FE, Gray SM (2008) Coupling
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2007
Berth M, Moser FM, Kolbe M, Bernhardt J (2007) The state of the art in the analysis of two-dimensional gel electrophoresis images. Appl Microbiol Biotechnol 76: 1223-1243.
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Khan A, Williams KL, Soon J, Nevalainen HK (2008) Proteomic analysis of the knob-producing
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Lam L, Arthur J, Semsarian C (2007) Proteome map of the normal murine ventricular
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