Progenesis SameSpots and Progenesis Stats have simplified our proteomics research as the software is easy to use and the technical support from the Nonlinear Dynamics team is excellent.
Progenesis SameSpots FAQs
- What new features will I receive if I update my current version of SameSpots?
- How does the Progenesis SameSpots approach work?
Setting up
- What PC specification do I need to run Progenesis SameSpots?
- How do I create a new experiment?
- Can I use Progenesis SameSpots for analysis of secondary stained gels?
- How do I use an image licence code?
Image QC
- Why are blank areas of my images being shown as saturated?
- What is the difference between dynamic range and intensity levels in use?
- How do I exclude images from analysis if they fail Image QC?
Alignment
- Why do I need to align my gels?
- How do I align my gels?
- What do the alignment views show?
- What are alignment vectors?
Analysis
- Which images should I use for spot detection?
- How is normalisation performed?
- How is background subtraction performed?
- How do I edit the spot matching?
- Can I get the spot measurements into Excel?
- Can I compare different groupings in the same experiment?
- How is the fold change calculated?
- How do I use tags?
- Can I use wildcards when searching my gels?
Statistics
- How do I investigate analysis results?
- What are missing values, and why are they a problem?
- What does Principal Component Analysis (PCA) show?
- What does the dendrogram show, or what is correlation analysis?
- What is power analysis?
- What are p-values?
- What are q-values, and why are they important?
SpotCheck
- How does Progenesis SpotCheck work?
- How do I create a Progenesis SpotCheck gold standard?
- What criteria should I use in my gold standard?
If your question isn't listed, ask us directly and we'll get back to you with an answer.
