Progenesis LC-MS enables fast and comprehensive detection of protein abundance changes between multiple complex protein samples.
Supported search engines and databases
PLGS version 2.3 (*final_peptide.csv)
Note, an alternative plugin is available for versions 2.5 and 2.4.
This plugin allows you to import peptide identification results from Waters MSE data generated by ProteinLynx Global Server (PLGS).
Before analysing samples in PLGS you should first us its automation options to make sure it will produce final peptide files.
- Open Tools|Automation Setup
- Spectra Output
- Apex3D
- Ion Accounting Output
- ensure "final_peptide" is ticked and select the output folder
You can then load the Waters RAW folders directly into PLGS. Load results into Progenesis LC-MS by finding and importing the final peptide reports from the output folder selected above, there should be one file for every sample analysed.
| Export format: | n/a |
|---|---|
| Import format: | PLGS final peptide reports (*final_peptide.csv) |
See also
More peptide search formats supported by Progenesis LC-MS.
