Waters | Nonlinear Dynamics

Progenesis QI for proteomics

The next generation in LC-MS proteomics data analysis software.
Discover the significantly changing proteins in your samples.


How do I export my peptide ion, peptide and protein measurements for external analysis?

Whilst Progenesis QI for proteomics allows you to carry out univariate and multivariate statistical tests within the software, and provides multivariate visualisation of your data along with QC metric charts, it is possible you may wish to carry out different analyses to suit your specific situation. To this end, the software allows the export of your data at the peptide ion, peptide and protein level.

In all cases, the data are only exported for the active tag filter (by default) and experimental grouping, but the values are not recalculated in any way – the restriction is purely a content filter. To export all data, i) use a grouping containing all the runs to avoid restricting the columns; and ii) clear any active tag filters.

All of these exports produce data in the csv format.

See also